Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACFKHK_RS07600 Genome accession   NZ_CP170760
Coordinates   1447296..1448231 (-) Length   311 a.a.
NCBI ID   WP_312248463.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1442296..1453231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS07570 - 1442571..1444211 (-) 1641 WP_171989866.1 polysaccharide biosynthesis protein -
  ACFKHK_RS07575 yghU 1444371..1445159 (-) 789 WP_392461614.1 glutathione-dependent disulfide-bond oxidoreductase -
  ACFKHK_RS07580 - 1445168..1445458 (-) 291 WP_392461616.1 hypothetical protein -
  ACFKHK_RS07585 rplA 1445565..1446254 (-) 690 WP_239604109.1 50S ribosomal protein L1 -
  ACFKHK_RS07590 rplK 1446295..1446720 (-) 426 WP_024382554.1 50S ribosomal protein L11 -
  ACFKHK_RS07595 - 1446875..1447243 (+) 369 WP_312220290.1 DUF3397 domain-containing protein -
  ACFKHK_RS07600 amiF 1447296..1448231 (-) 936 WP_312248463.1 ATP-binding cassette domain-containing protein Regulator
  ACFKHK_RS07605 oppD 1448228..1449271 (-) 1044 WP_171989134.1 ABC transporter ATP-binding protein Regulator
  ACFKHK_RS07610 - 1449286..1450317 (-) 1032 WP_174845522.1 ABC transporter permease -
  ACFKHK_RS07615 - 1450328..1451242 (-) 915 WP_171989135.1 ABC transporter permease -
  ACFKHK_RS07620 - 1451313..1452959 (-) 1647 WP_392461620.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35010.77 Da        Isoelectric Point: 6.0122

>NTDB_id=1059272 ACFKHK_RS07600 WP_312248463.1 1447296..1448231(-) (amiF) [Streptococcus parasuis strain FZ2]
MSENRKKLVELKNVSLTFNAGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRTILKLYDYNAGDILFDGQSISKL
SGKDLKEFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTPSKEERDERVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVRPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFVAHDLSMVKYISDRIGVMHWGKMLEIGTSDA
VYNDPIHPYTKSLLSAIPEPDPEFEKGRVHMEYDPSAELDGQERQMHEITPGHFVLATEEEAAAYRAERNK

Nucleotide


Download         Length: 936 bp        

>NTDB_id=1059272 ACFKHK_RS07600 WP_312248463.1 1447296..1448231(-) (amiF) [Streptococcus parasuis strain FZ2]
ATGAGCGAAAATAGAAAAAAACTCGTTGAACTAAAAAATGTTTCATTGACTTTTAATGCAGGTAAGAAAAACGAAGTTAA
AGCCATTGACAATGTTTCCTTTGACATTTATGAAGGAGAGGTCTTTGGTCTCGTTGGTGAATCTGGGTCAGGAAAGACAA
CGGTTGGCCGTACCATTTTAAAGTTGTATGACTATAATGCTGGTGATATTCTCTTTGATGGCCAGTCTATTTCAAAGCTT
TCTGGAAAAGATTTGAAAGAATTTCGAAAAGATGCACAAATGATTTTCCAAGATCCTCAAGCTAGTTTGAATGGTCGTAT
GAAAATCAGAGATATTGTTGCAGAAGGTTTGGACATTCACGGCTTGACTCCTTCAAAAGAAGAACGGGATGAGCGTGTTC
AACATTTATTGGATTTAGTCGGTTTAAATAAGGATCATTTAACGCGTTATCCGCATGAGTTTTCAGGTGGACAACGACAA
CGGATTGGTATTGCACGTGCCTTAGCAGTTCGTCCAAAATTCATTATCGCTGACGAACCAATCTCAGCTTTAGATGTATC
CATTCAAGCACAAGTTGTTAATTTGATGCAAAAATTGCAGAGAGAACAAGGTCTAACCTACCTCTTTGTTGCACACGATT
TGTCAATGGTTAAGTACATCTCTGACCGTATTGGTGTTATGCACTGGGGTAAAATGTTGGAAATTGGAACGTCGGATGCT
GTTTACAATGATCCAATTCATCCGTACACGAAGAGTTTGCTTTCTGCTATCCCTGAACCGGATCCAGAATTTGAAAAAGG
TCGTGTCCATATGGAATACGATCCAAGTGCTGAATTAGATGGTCAAGAACGTCAGATGCATGAGATTACGCCTGGTCACT
TTGTATTGGCTACAGAAGAAGAGGCTGCGGCATACCGCGCTGAACGAAACAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

52.922

99.035

0.524
  amiF Streptococcus thermophilus LMG 18311

52.597

99.035

0.521
  amiF Streptococcus salivarius strain HSISS4

52.273

99.035

0.518

Multiple sequence alignment