Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACFKHK_RS00700 Genome accession   NZ_CP170760
Coordinates   133386..134753 (+) Length   455 a.a.
NCBI ID   WP_392462642.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 128386..139753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS00670 - 128782..129576 (-) 795 WP_392462236.1 formate/nitrite transporter family protein -
  ACFKHK_RS00675 - 129806..131041 (-) 1236 WP_171988979.1 NAD(P)H-dependent oxidoreductase -
  ACFKHK_RS00680 - 131056..131658 (-) 603 WP_002939942.1 NADPH-dependent FMN reductase -
  ACFKHK_RS00685 - 131787..132146 (+) 360 WP_392462238.1 YbaN family protein -
  ACFKHK_RS00690 - 132377..132820 (+) 444 WP_024388517.1 dUTP diphosphatase -
  ACFKHK_RS00695 - 132827..133360 (+) 534 WP_392462241.1 histidine phosphatase family protein -
  ACFKHK_RS00700 radA 133386..134753 (+) 1368 WP_392462642.1 DNA repair protein RadA Machinery gene
  ACFKHK_RS00705 - 134877..135371 (+) 495 WP_171988974.1 carbonic anhydrase -
  ACFKHK_RS00710 - 135571..136329 (+) 759 WP_171988973.1 TIGR00266 family protein -
  ACFKHK_RS00715 - 136500..136625 (+) 126 WP_274505519.1 hypothetical protein -
  ACFKHK_RS00720 - 136612..136983 (+) 372 WP_392462243.1 hypothetical protein -
  ACFKHK_RS00725 gltX 137372..138826 (+) 1455 WP_392462245.1 glutamate--tRNA ligase -
  ACFKHK_RS00730 - 138867..139304 (-) 438 WP_392462643.1 adenylate kinase -
  ACFKHK_RS00735 - 139376..139741 (-) 366 WP_174846595.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49844.38 Da        Isoelectric Point: 6.5145

>NTDB_id=1059247 ACFKHK_RS00700 WP_392462642.1 133386..134753(+) (radA) [Streptococcus parasuis strain FZ2]
MIIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAATNMQSIRTE
IEKIKPDFMIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPSMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1059247 ACFKHK_RS00700 WP_392462642.1 133386..134753(+) (radA) [Streptococcus parasuis strain FZ2]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGCCAAAATTGTGAATACCATTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTTGAAGTCGCTGAAGTCAAGAACGAGCGGGTTAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCTCGCACCAAGACCAACATGGAGGAGTTTAAC
CGTGTCCTCGGTGGCGGTGTGGTGCCAGGGAGTCTGGTCCTGATCGGAGGCGATCCAGGGATTGGCAAATCCACCCTACT
CTTGCAGGTTTCGACCCAGCTTTCGACCATTGGTACCGTCCTCTATGTGTCCGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAACGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGCGACCAATATGCAGAGCATTCGGACCGAG
ATTGAAAAGATTAAGCCAGATTTCATGATTATCGACTCTATCCAGACCATTATGAGTCCTGACATTTCTAGCGTACAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAAATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GTCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAAGGC
GAGCGGCAGCATACCTTTCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGTTTGGTCGAAGTCCTCAATCCTAGTGAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCGGAAGTGCAGGCTCTGGTGACCCCGAGCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCTGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAAGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAGATTGGCCTGACAGGTGAA
ATCCGCCGTGTCAATCGGATTGAGCAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCTCCTAAAAA
TTCCCTGACCGGTATCAAGGTGCCCAAGGAAATCACGGTTATCGGCGTGACAACAATTGGCGAAGTTCTGCAAAAAGTGT
TTAACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

90.929

99.341

0.903
  radA Streptococcus pneumoniae Rx1

90.708

99.341

0.901
  radA Streptococcus pneumoniae D39

90.708

99.341

0.901
  radA Streptococcus pneumoniae R6

90.708

99.341

0.901
  radA Streptococcus pneumoniae TIGR4

90.708

99.341

0.901
  radA Streptococcus mitis SK321

90.487

99.341

0.899
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

99.56

0.618

Multiple sequence alignment