Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ACFKHJ_RS06370 Genome accession   NZ_CP170759
Coordinates   1231855..1232694 (-) Length   279 a.a.
NCBI ID   WP_392452092.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1226855..1237694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS06355 pheT 1226991..1229390 (-) 2400 WP_239603974.1 phenylalanine--tRNA ligase subunit beta -
  ACFKHJ_RS06360 - 1229392..1229913 (-) 522 WP_392452091.1 GNAT family N-acetyltransferase -
  ACFKHJ_RS06365 pheS 1230560..1231603 (-) 1044 WP_239603975.1 phenylalanine--tRNA ligase subunit alpha -
  ACFKHJ_RS06370 endA 1231855..1232694 (-) 840 WP_392452092.1 DNA/RNA non-specific endonuclease Machinery gene
  ACFKHJ_RS06375 - 1232724..1232915 (-) 192 WP_312221164.1 DNA-directed RNA polymerase subunit beta -
  ACFKHJ_RS06380 murA 1232908..1234191 (-) 1284 WP_392452093.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFKHJ_RS06385 - 1234214..1234441 (-) 228 WP_171988707.1 DUF1146 family protein -
  ACFKHJ_RS06390 - 1234501..1234917 (-) 417 WP_171988708.1 F0F1 ATP synthase subunit epsilon -
  ACFKHJ_RS06395 atpD 1234927..1236333 (-) 1407 WP_216806657.1 F0F1 ATP synthase subunit beta -
  ACFKHJ_RS06400 - 1236355..1237233 (-) 879 WP_392452094.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30173.43 Da        Isoelectric Point: 6.5002

>NTDB_id=1059212 ACFKHJ_RS06370 WP_392452092.1 1231855..1232694(-) (endA) [Streptococcus parasuis strain FZ1]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNRSKASEGTPSQELANSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTELDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREATGNGRTSWTPAGWHQIHDLPGEYDHA
FDRGHLLGYALIGGLAGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1059212 ACFKHJ_RS06370 WP_392452092.1 1231855..1232694(-) (endA) [Streptococcus parasuis strain FZ1]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTTTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGCGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCGGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAATTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGGAATCAAACGGAATTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTTCAGGGAGAAACGGTTCCAACGGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGATCGTGAAG
CAACAGGTAATGGACGTACGTCATGGACTCCTGCAGGCTGGCACCAAATTCATGATTTGCCAGGGGAATATGATCATGCA
TTTGATCGTGGACATCTTTTAGGCTATGCCTTGATTGGTGGTCTTGCTGGATTTGATGCCTCAACAAGTAATCCCAAAAA
CATAGCGGTTCAAACTGCCTGGTCTAATCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAAATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGTCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTGAATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.49

91.398

0.599
  endA Streptococcus pneumoniae D39

65.49

91.398

0.599
  endA Streptococcus pneumoniae R6

65.49

91.398

0.599
  endA Streptococcus pneumoniae TIGR4

65.49

91.398

0.599

Multiple sequence alignment