Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACFKHJ_RS00780 Genome accession   NZ_CP170759
Coordinates   144723..146090 (+) Length   455 a.a.
NCBI ID   WP_130554220.1    Uniprot ID   A0A4Q8L3V7
Organism   Streptococcus parasuis strain FZ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 144183..165547 144723..146090 within 0


Gene organization within MGE regions


Location: 144183..165547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS00775 - 144183..144716 (+) 534 WP_392452742.1 histidine phosphatase family protein -
  ACFKHJ_RS00780 radA 144723..146090 (+) 1368 WP_130554220.1 DNA repair protein RadA Machinery gene
  ACFKHJ_RS00785 - 146214..146708 (+) 495 WP_392452743.1 beta-class carbonic anhydrase -
  ACFKHJ_RS00790 - 146908..147666 (+) 759 WP_171988973.1 TIGR00266 family protein -
  ACFKHJ_RS00795 - 147837..148283 (+) 447 WP_216806201.1 LytTR family DNA-binding domain-containing protein -
  ACFKHJ_RS00800 - 148288..148962 (+) 675 WP_216806200.1 hypothetical protein -
  ACFKHJ_RS00805 - 149047..149211 (+) 165 WP_253952789.1 hypothetical protein -
  ACFKHJ_RS00810 - 149324..149488 (+) 165 WP_253952788.1 hypothetical protein -
  ACFKHJ_RS00815 - 149503..150327 (+) 825 WP_392453214.1 MFS transporter -
  ACFKHJ_RS00820 gltX 150716..152170 (+) 1455 WP_171988972.1 glutamate--tRNA ligase -
  ACFKHJ_RS00825 - 152211..152723 (-) 513 WP_392452745.1 adenylate kinase -
  ACFKHJ_RS00830 - 152720..153085 (-) 366 WP_392452747.1 MerR family transcriptional regulator -
  ACFKHJ_RS00835 - 153146..153436 (+) 291 WP_392452749.1 hypothetical protein -
  ACFKHJ_RS00840 - 153648..153929 (-) 282 WP_392452751.1 NUDIX domain-containing protein -
  ACFKHJ_RS00845 - 154052..154927 (+) 876 Protein_145 VOC family protein -
  ACFKHJ_RS00850 - 155031..155558 (+) 528 WP_024397302.1 transcription repressor NadR -
  ACFKHJ_RS00855 - 155629..156177 (+) 549 WP_171988969.1 hypothetical protein -
  ACFKHJ_RS00860 - 156369..157562 (+) 1194 WP_171988968.1 argininosuccinate synthase -
  ACFKHJ_RS00865 argH 157576..158970 (+) 1395 WP_171988967.1 argininosuccinate lyase -
  ACFKHJ_RS00870 rnpA 159041..159400 (+) 360 WP_174846592.1 ribonuclease P protein component -
  ACFKHJ_RS00875 - 159384..160196 (+) 813 WP_174846591.1 YidC/Oxa1 family membrane protein insertase -
  ACFKHJ_RS00880 jag 160215..161219 (+) 1005 WP_392452755.1 RNA-binding cell elongation regulator Jag/EloR -
  ACFKHJ_RS00885 rpmH 161440..161577 (+) 138 WP_049618373.1 50S ribosomal protein L34 -
  ACFKHJ_RS00890 - 161627..162508 (-) 882 WP_392452757.1 diacylglycerol/lipid kinase family protein -
  ACFKHJ_RS00895 - 162658..163440 (+) 783 WP_171988962.1 TatD family hydrolase -
  ACFKHJ_RS00900 rnmV 163424..163990 (+) 567 WP_171989046.1 ribonuclease M5 -
  ACFKHJ_RS00905 - 163983..164111 (+) 129 WP_275577031.1 hypothetical protein -
  ACFKHJ_RS00910 - 164207..164377 (+) 171 WP_239604456.1 hypothetical protein -
  ACFKHJ_RS00915 - 164384..164642 (+) 259 Protein_159 8-oxo-dGTP diphosphatase -
  ACFKHJ_RS00920 rsmA 164675..165547 (+) 873 WP_171988961.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49884.38 Da        Isoelectric Point: 6.1911

>NTDB_id=1059190 ACFKHJ_RS00780 WP_130554220.1 144723..146090(+) (radA) [Streptococcus parasuis strain FZ1]
MIIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPSMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1059190 ACFKHJ_RS00780 WP_130554220.1 144723..146090(+) (radA) [Streptococcus parasuis strain FZ1]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGCCAAAATTGTGAATACCATTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTTGAAGTCGCTGAAGTCAAGAACGAGCGGGTTAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCTCGCACCAAGACCAACATGGAGGAGTTTAAC
CGTGTCCTCGGTGGCGGTGTGGTGCCAGGGAGTCTGGTCCTGATCGGAGGCGATCCAGGGATTGGCAAATCCACCCTACT
CTTGCAGGTTTCGACCCAGCTTTCGACCATTGGTACCGTCCTCTATGTGTCCGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAACGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAAAAGATTAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGTCCTGACATTTCTAGCGTACAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAAATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GTCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAAGGC
GAGCGGCAGCATACCTTTCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGTTTGGTCGAAGTCCTAAATCCTAGTGAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCGGAAGTGCAGGCTCTGGTGACCCCGAGCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCTGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAAGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAGATTGGCCTGACAGGTGAA
ATCCGCCGTGTCAATCGGATTGAGCAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCTCCTAAAAA
TTCCCTGACCGGTATCAAGGTGCCCAAGGAAATCACGGTTATCGGCGTGACAACAATTGGCGAAGTTCTGCAAAAAGTGT
TTAACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q8L3V7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

99.56

0.62

Multiple sequence alignment