Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACFE3T_RS01675 Genome accession   NZ_CP170742
Coordinates   346933..348372 (+) Length   479 a.a.
NCBI ID   WP_099994508.1    Uniprot ID   A0AAX3VN16
Organism   Aeromonas salmonicida strain XN-7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341933..353372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFE3T_RS01645 (ACFE3T_01645) mlaF 342511..343311 (-) 801 WP_011898278.1 phospholipid ABC transporter ATP-binding protein MlaF -
  ACFE3T_RS01650 (ACFE3T_01650) - 343518..344513 (+) 996 WP_099994512.1 KpsF/GutQ family sugar-phosphate isomerase -
  ACFE3T_RS01655 (ACFE3T_01655) kdsC 344513..345067 (+) 555 WP_219593095.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ACFE3T_RS01660 (ACFE3T_01660) lptC 345064..345624 (+) 561 WP_099994510.1 LPS export ABC transporter periplasmic protein LptC -
  ACFE3T_RS01665 (ACFE3T_01665) lptA 345611..346138 (+) 528 WP_192873422.1 lipopolysaccharide transport periplasmic protein LptA -
  ACFE3T_RS01670 (ACFE3T_01670) lptB 346142..346867 (+) 726 WP_005314412.1 LPS export ABC transporter ATP-binding protein -
  ACFE3T_RS01675 (ACFE3T_01675) rpoN/rpoN1 346933..348372 (+) 1440 WP_099994508.1 RNA polymerase factor sigma-54 Machinery gene
  ACFE3T_RS01680 (ACFE3T_01680) hpf 348394..348681 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  ACFE3T_RS01685 (ACFE3T_01685) ptsN 348684..349130 (+) 447 WP_005314406.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACFE3T_RS01690 (ACFE3T_01690) rapZ 349173..350039 (+) 867 WP_392400332.1 RNase adapter RapZ -
  ACFE3T_RS01695 (ACFE3T_01695) npr 350060..350332 (+) 273 WP_005314403.1 PTS phosphocarrier protein NPr -
  ACFE3T_RS01700 (ACFE3T_01700) - 350351..352255 (-) 1905 WP_099994507.1 transcription antiterminator -
  ACFE3T_RS01705 (ACFE3T_01705) - 352359..353099 (-) 741 WP_099994506.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53877.82 Da        Isoelectric Point: 4.3484

>NTDB_id=1059073 ACFE3T_RS01675 WP_099994508.1 346933..348372(+) (rpoN/rpoN1) [Aeromonas salmonicida strain XN-7]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEVQETSPEEPVDDSQLDSSDAMAQDQMP
DELPVDTTWEDVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDDSGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYAPELPWLNEAREVIKEHMDLLGNRDYRTLARK
TKLKESDLKEVLDLIQQLEPRPGNGIIQSDSQYVIPDVTVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVATCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=1059073 ACFE3T_RS01675 WP_099994508.1 346933..348372(+) (rpoN/rpoN1) [Aeromonas salmonicida strain XN-7]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAACAATCCTTTGCTTGAGCAAGAGGAGAATGAGG
TTCAGGAGACCAGCCCGGAAGAGCCCGTCGACGACAGTCAGCTCGACTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GATGAACTGCCGGTAGATACCACCTGGGAAGATGTCTATTCAGCCGGCACAGCCCAGAGCGCAGGCCCCATCCACGATGG
GGAGGACAGCGTCTATCAGGGGGAAACCACCGAGAACCTGCAGGACTATCTGCTGTGGCAGATGCGCCTCACCCCGTTCA
GCGATCTGGATGCTGCCATTGCGCTGGCCATCATAGATGCCATCGATGACTCCGGTTATCTGACCGTCTCTCTCGAAGAT
ATACAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAACTCGACGAGGTCGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATTGCCGCTCGCTCGGTGCAGGAGTGTCTGCTGATCCAGCTCGGCCAGTACGCTCCTGAACTGCCCT
GGCTCAATGAGGCCAGGGAGGTGATCAAGGAGCACATGGACTTGCTCGGCAACCGTGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTCAAGGAGAGTGACCTCAAGGAGGTGCTGGACCTTATCCAGCAGCTGGAGCCCAGGCCGGGTAACGGCATCAT
ACAGAGTGACTCCCAGTACGTGATCCCGGATGTCACCGTCGTTAAGAAGGGCAACAAATGGGTCGTCGAGCTCAACCCTG
ATTCTGCACCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGTCAGGCGCGTACCAGCCAGGATACCCAGTTC
ATTCGCTCCCACTTGCAAGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCGAC
CTGTATTGTCGAGCAACAACAGGGCTTTTTCGAGTATGGTGAAGAAGCCATGAAGCCCATGGTGCTCAACGATATCGCCG
AGGCGGTGGAGATGCATGAGTCGACCATTTCCAGGGTAACGACCCAGAAATACATGCATACCCCCCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTGAACACAGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTGATCAA
GAAGCTGGTGACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.972

100

0.489

Multiple sequence alignment