Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACE83Q_RS04510 Genome accession   NZ_CP170736
Coordinates   884934..886304 (-) Length   456 a.a.
NCBI ID   WP_409021546.1    Uniprot ID   -
Organism   Dellaglioa sp. P0083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 879934..891304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE83Q_RS04490 (ACE83Q_04495) - 880092..880514 (-) 423 WP_409021543.1 Mini-ribonuclease 3 -
  ACE83Q_RS04495 (ACE83Q_04500) cysS 880514..881923 (-) 1410 WP_409022814.1 cysteine--tRNA ligase -
  ACE83Q_RS04500 (ACE83Q_04505) gltX 882182..883675 (-) 1494 WP_409021544.1 glutamate--tRNA ligase -
  ACE83Q_RS04505 (ACE83Q_04510) - 883805..884917 (-) 1113 WP_409021545.1 PIN/TRAM domain-containing protein -
  ACE83Q_RS04510 (ACE83Q_04515) radA 884934..886304 (-) 1371 WP_409021546.1 DNA repair protein RadA Machinery gene
  ACE83Q_RS04515 (ACE83Q_04520) - 886406..886942 (-) 537 WP_409021548.1 dUTP diphosphatase -
  ACE83Q_RS04520 (ACE83Q_04525) - 887055..887339 (+) 285 WP_409021549.1 GNAT family N-acetyltransferase -
  ACE83Q_RS04525 (ACE83Q_04530) rpiA 887360..888061 (+) 702 WP_409021550.1 ribose-5-phosphate isomerase RpiA -
  ACE83Q_RS04530 (ACE83Q_04535) - 888222..889556 (+) 1335 WP_409021551.1 aminopeptidase C -
  ACE83Q_RS04535 (ACE83Q_04540) - 889588..890271 (-) 684 WP_409021552.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49460.74 Da        Isoelectric Point: 5.8166

>NTDB_id=1059006 ACE83Q_RS04510 WP_409021546.1 884934..886304(-) (radA) [Dellaglioa sp. P0083]
MAKVKTQFVCQNCGYTSPKYLGRCPNCNEWNTMVEEREQSQKADRKARVSFTGASVKPELLDDISMAEQERVETELGELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLSQTGGTVLYVSGEESAVQIKMRAQRLGVGGQKFYLYPETDMGNIRQ
NIETLNPDYVVIDSIQTMQEPEMSAAVGSVSQIREVTAELLQIAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDMHHTFRILRAVKNRFGSTNEIGIFDMREGGLFEVANPSEIFLEERLAGATGSAIVVSMEGTRPILVEVQALITPTVYG
TAKRTTTGLDHNRVSLIMAVLEKRASLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKETDPADSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFKRIFIPKNNLSGWTPPKGITVVGVATLSEALKVVFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1059006 ACE83Q_RS04510 WP_409021546.1 884934..886304(-) (radA) [Dellaglioa sp. P0083]
ATGGCGAAAGTAAAAACGCAATTTGTATGTCAAAATTGTGGATACACCTCACCAAAGTATTTAGGACGTTGCCCTAACTG
TAACGAATGGAACACAATGGTAGAAGAGCGTGAACAATCACAAAAAGCAGATCGTAAAGCTCGTGTCAGTTTTACTGGAG
CTTCTGTTAAACCAGAATTATTAGATGATATCTCAATGGCAGAACAAGAACGTGTTGAAACTGAGTTAGGTGAATTAAAT
CGCGTTCTTGGTGGTGGTGTTGTACCTGGGTCATTAGTTTTAATTGGCGGTGATCCAGGCATTGGTAAATCAACATTACT
TTTACAAGTTTCTGGGCAACTAAGTCAAACTGGTGGAACTGTCTTATATGTTTCTGGTGAAGAAAGTGCTGTACAAATTA
AAATGCGTGCACAACGCCTTGGTGTTGGAGGTCAGAAATTTTATCTTTATCCTGAAACGGATATGGGTAATATTCGTCAA
AATATTGAGACGTTAAATCCTGATTACGTAGTCATTGATTCGATTCAAACAATGCAAGAACCGGAGATGTCCGCTGCAGT
TGGTAGTGTTTCACAAATTCGAGAAGTAACTGCTGAACTATTACAAATTGCTAAAACAAATGGTATTACGATTTTTATTG
TTGGGCATGTAACAAAAGGTGGTGCGATTGCTGGTCCTAAAATTTTGGAACATATGGTTGATACAGTCCTTTATTTTGAA
GGAGATATGCACCACACGTTCCGTATTTTACGCGCAGTTAAAAACCGATTTGGTTCAACAAATGAAATTGGGATTTTTGA
TATGCGTGAAGGTGGGCTATTTGAAGTTGCAAACCCGTCAGAAATTTTCTTAGAAGAACGTTTGGCTGGCGCAACAGGTT
CTGCTATTGTTGTATCTATGGAAGGAACACGACCTATATTGGTTGAAGTTCAAGCATTGATTACACCAACAGTTTACGGA
ACGGCGAAGCGAACAACTACAGGACTTGATCATAATCGTGTGTCATTAATAATGGCCGTTCTTGAAAAACGCGCAAGTTT
ATTATTACAGAACCAGGATGCTTATCTAAAAGCGGCTGGCGGCGTAAAATTAGATGAACCGGCTATTGATCTAGCGATTG
CAGTTAGCATTGCATCAAGTTATCGAGATAAAGAAACGGATCCCGCAGATAGTTTTGTAGGTGAAATTGGATTGACTGGT
GAAATTCGACGCGTTAATCGGATTGAACAACGCGTTGCTGAAGCACAAAAGCTAGGATTTAAACGGATTTTTATTCCCAA
AAATAATTTATCGGGATGGACACCACCTAAAGGAATTACAGTTGTTGGTGTTGCTACACTAAGTGAAGCACTAAAAGTAG
TGTTTAGTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

71.491

100

0.715
  radA Streptococcus mitis SK321

71.272

100

0.713
  radA Streptococcus pneumoniae Rx1

71.272

100

0.713
  radA Streptococcus pneumoniae D39

71.272

100

0.713
  radA Streptococcus pneumoniae R6

71.272

100

0.713
  radA Streptococcus pneumoniae TIGR4

71.272

100

0.713
  radA Bacillus subtilis subsp. subtilis str. 168

67.55

99.342

0.671

Multiple sequence alignment