Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACE83Q_RS04005 Genome accession   NZ_CP170736
Coordinates   801473..803293 (-) Length   606 a.a.
NCBI ID   WP_409021468.1    Uniprot ID   -
Organism   Dellaglioa sp. P0083     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 796473..808293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE83Q_RS03980 (ACE83Q_03985) mgtE 796818..798185 (-) 1368 WP_409022809.1 magnesium transporter -
  ACE83Q_RS03985 (ACE83Q_03990) - 798203..799096 (-) 894 WP_409022810.1 RluA family pseudouridine synthase -
  ACE83Q_RS03990 (ACE83Q_03995) - 799086..799889 (-) 804 WP_409021465.1 NAD kinase -
  ACE83Q_RS03995 (ACE83Q_04000) - 799929..800558 (-) 630 WP_409021466.1 GTP pyrophosphokinase family protein -
  ACE83Q_RS04000 (ACE83Q_04005) - 800812..801429 (+) 618 WP_409021467.1 DsbA family protein -
  ACE83Q_RS04005 (ACE83Q_04010) pepF 801473..803293 (-) 1821 WP_409021468.1 oligoendopeptidase F Regulator
  ACE83Q_RS04010 (ACE83Q_04015) - 803342..804484 (-) 1143 WP_409021469.1 competence protein CoiA -
  ACE83Q_RS04015 (ACE83Q_04020) - 804552..805226 (-) 675 WP_409021470.1 adaptor protein MecA -
  ACE83Q_RS04020 (ACE83Q_04025) spxA 805395..805793 (-) 399 WP_409021471.1 transcriptional regulator SpxA -
  ACE83Q_RS04025 (ACE83Q_04030) - 806200..806937 (-) 738 WP_409021472.1 MBL fold metallo-hydrolase -
  ACE83Q_RS04030 (ACE83Q_04035) - 807029..807538 (+) 510 WP_409021473.1 antibiotic biosynthesis monooxygenase -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69298.74 Da        Isoelectric Point: 4.8750

>NTDB_id=1059003 ACE83Q_RS04005 WP_409021468.1 801473..803293(-) (pepF) [Dellaglioa sp. P0083]
MTVAKQLPKREEVPENLTWDVEKIYGSDSLFEEDYKKIEESVVTIANFKGTLSQDSTTMLRGLEAILALERMFEKVYVYA
NLKNDQDTENSTYQALNARAGALAAKVSAAISWFEPEIIAIPEDTLKQFMSDNPDLKGYRHFFDSLLLEKDHVLSHAEET
LLAGAGDIFSASSKTFEILNNADLKFPVVQDEQGNDVQLSQGIYGVLLESTSRDVREQAFKKLYEVYGQFQNTLASTLSS
HVKVHNYSAQVRRYKSARDASLSNNQIPEIVYNTLIDQVNKNLPLLHRYVALRKKILKVEKLHSYDLYTPITGEPALSYT
YDEAKSEALKALDKMGPDYLSHVQEAFDNRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQNNVNNFYTLVHEMGHSIHS
YYTHHNQPYLYGDYPIFLAEIASTTNENTLTHYLLETQTDPKVRAFLLNYYLDGFKGTIFRQTQFAEFEHWIHEEDAVGN
PLTADKLSKYYADLNQKYYGESLERDPEIAMEWSRIPHFYYNYYVYQYATGFAAATTLSEGITSGKPDALENYLNYLKAG
SSDFPVDVMKKAGVDMTKSAYLFNAFTVFEARLNELEALLPQILEK

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=1059003 ACE83Q_RS04005 WP_409021468.1 801473..803293(-) (pepF) [Dellaglioa sp. P0083]
ATGACAGTAGCTAAGCAATTACCAAAACGTGAAGAGGTACCAGAAAATTTAACGTGGGATGTAGAAAAAATATATGGTTC
CGATTCATTATTTGAAGAAGATTACAAAAAAATTGAAGAATCTGTAGTAACTATTGCTAATTTTAAAGGGACGTTGAGTC
AAGATAGTACAACAATGTTACGTGGATTAGAAGCTATTTTGGCGCTTGAACGGATGTTTGAAAAAGTATACGTGTATGCG
AATTTAAAAAACGATCAAGATACAGAAAATTCAACTTATCAAGCTTTAAATGCTAGGGCTGGTGCCTTGGCAGCTAAGGT
ATCAGCTGCTATTTCCTGGTTTGAACCCGAAATTATTGCGATACCAGAGGATACTTTAAAGCAATTTATGTCTGATAATC
CTGATTTAAAAGGCTATCGTCATTTTTTTGATAGTTTATTATTGGAGAAGGATCATGTCCTTTCGCATGCTGAAGAAACG
CTCTTAGCTGGAGCAGGGGATATATTTAGCGCCTCTTCTAAAACATTTGAAATACTGAATAATGCTGATTTGAAATTTCC
AGTTGTTCAAGACGAACAGGGGAATGATGTTCAATTATCACAAGGTATTTATGGGGTCCTTCTAGAATCAACTTCTAGAG
ATGTCAGAGAACAGGCTTTTAAGAAATTATATGAAGTCTATGGACAATTCCAAAACACATTGGCTTCAACACTTTCAAGC
CATGTTAAAGTTCATAATTATAGTGCGCAAGTTCGACGGTATAAAAGTGCCAGAGATGCTTCATTATCAAATAATCAGAT
TCCTGAAATTGTCTATAATACACTAATTGATCAGGTAAATAAGAATTTACCGTTGTTACACCGTTATGTTGCATTACGTA
AGAAAATTTTAAAAGTTGAAAAATTACATTCATACGATTTATATACACCAATAACAGGCGAACCCGCACTAAGCTATACC
TATGATGAAGCGAAAAGCGAGGCATTAAAAGCCTTAGACAAAATGGGGCCTGATTATTTAAGTCATGTTCAAGAAGCATT
TGATAATCGTTGGATTGATGTTGTTGAAAATCAAGGTAAAAGAAGTGGTGCCTATTCATCGGGTATGTATGATACAGCAC
CATATATGTTATTAAACTGGCAAAATAATGTGAATAATTTTTATACATTGGTACATGAAATGGGACATAGTATTCATAGT
TACTATACACATCATAATCAGCCTTATTTGTATGGTGATTATCCAATCTTTTTAGCAGAAATAGCGTCAACAACTAATGA
AAATACGTTAACACATTATTTGTTAGAGACTCAAACAGATCCTAAGGTTAGGGCATTTTTACTTAATTACTATTTGGACG
GGTTTAAAGGAACTATCTTCCGTCAAACGCAATTTGCAGAATTTGAACATTGGATTCATGAGGAAGACGCGGTAGGAAAT
CCACTAACTGCTGATAAACTATCTAAATATTATGCTGATTTAAATCAAAAGTATTATGGCGAGAGTTTAGAGCGTGATCC
AGAAATTGCAATGGAATGGTCAAGAATTCCGCATTTTTATTATAATTATTATGTCTATCAATATGCAACTGGTTTTGCTG
CTGCGACCACTTTATCTGAGGGAATCACTAGTGGAAAACCTGATGCATTAGAAAACTATTTGAATTATTTGAAAGCTGGG
AGTTCAGATTTTCCAGTTGATGTCATGAAAAAAGCAGGTGTAGATATGACTAAATCGGCCTATCTATTTAACGCATTTAC
TGTATTTGAAGCAAGATTGAATGAATTAGAGGCATTATTACCTCAAATCTTGGAGAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.288

97.855

0.521

Multiple sequence alignment