Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | ACFIGL_RS13350 | Genome accession | NZ_CP170734 |
| Coordinates | 2552347..2552682 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain M51 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2547347..2557682
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFIGL_RS13330 (ACFIGL_13340) | gcvT | 2547939..2549027 (-) | 1089 | WP_004398598.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACFIGL_RS13335 (ACFIGL_13345) | hepAA | 2549469..2551142 (+) | 1674 | WP_004398544.1 | DEAD/DEAH box helicase | - |
| ACFIGL_RS13340 (ACFIGL_13350) | yqhG | 2551163..2551957 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| ACFIGL_RS13345 (ACFIGL_13355) | sinI | 2552140..2552313 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| ACFIGL_RS13350 (ACFIGL_13360) | sinR | 2552347..2552682 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| ACFIGL_RS13355 (ACFIGL_13365) | tasA | 2552775..2553560 (-) | 786 | WP_004398632.1 | biofilm matrix protein TasA | - |
| ACFIGL_RS13360 (ACFIGL_13370) | sipW | 2553624..2554196 (-) | 573 | WP_003246088.1 | signal peptidase I SipW | - |
| ACFIGL_RS13365 (ACFIGL_13375) | tapA | 2554180..2554941 (-) | 762 | WP_004399106.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ACFIGL_RS13370 (ACFIGL_13380) | yqzG | 2555213..2555539 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| ACFIGL_RS13375 (ACFIGL_13385) | spoIITA | 2555581..2555760 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| ACFIGL_RS13380 (ACFIGL_13390) | comGG | 2555831..2556205 (-) | 375 | WP_003230170.1 | ComG operon protein ComGG | Machinery gene |
| ACFIGL_RS13385 (ACFIGL_13395) | comGF | 2556206..2556589 (-) | 384 | WP_003230168.1 | ComG operon protein ComGF | Machinery gene |
| ACFIGL_RS13390 (ACFIGL_13400) | comGE | 2556615..2556962 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| ACFIGL_RS13395 (ACFIGL_13405) | comGD | 2556946..2557377 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| ACFIGL_RS13400 (ACFIGL_13410) | comGC | 2557367..2557663 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=1058950 ACFIGL_RS13350 WP_003226345.1 2552347..2552682(+) (sinR) [Bacillus subtilis strain M51]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=1058950 ACFIGL_RS13350 WP_003226345.1 2552347..2552682(+) (sinR) [Bacillus subtilis strain M51]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |