Detailed information NTG1058852

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ACFXAC_RS19545
• Genome accession: NZ_CP170720
• Coordinates: 3993245..3994357 (+)
• Length: 370 a.a.
• NCBI ID: WP_053573832.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5006
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3988245..3999357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAC_RS19520 (ACFXAC_19520)	rnpA	3988958..3989308 (-)	351	WP_004392944.1	ribonuclease P protein component	-
ACFXAC_RS19525 (ACFXAC_19525)	rpmH	3989462..3989596 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
ACFXAC_RS19530 (ACFXAC_19530)	dnaA	3990218..3991558 (+)	1341	WP_007409908.1	chromosomal replication initiator protein DnaA	-
ACFXAC_RS19535 (ACFXAC_19535)	dnaN	3991743..3992879 (+)	1137	WP_053573833.1	DNA polymerase III subunit beta	-
ACFXAC_RS19540 (ACFXAC_19540)	rlbA	3993014..3993229 (+)	216	WP_004392910.1	ribosome maturation protein RlbA	-
ACFXAC_RS19545 (ACFXAC_19545)	recF	3993245..3994357 (+)	1113	WP_053573832.1	DNA replication/repair protein RecF	Machinery gene
ACFXAC_RS19550 (ACFXAC_19550)	remB	3994375..3994620 (+)	246	WP_004392908.1	extracellular matrix regulator RemB	-
ACFXAC_RS19555 (ACFXAC_19555)	gyrB	3994677..3996593 (+)	1917	WP_014720600.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
ACFXAC_RS19560 (ACFXAC_19560)	gyrA	3996809..3999268 (+)	2460	WP_004392898.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42430.36 Da
• Isoelectric Point: 7.0882

>NTDB_id=1058852 ACFXAC_RS19545 WP_053573832.1 3993245..3994357(+) (recF) [Bacillus amyloliquefaciens strain JP5006]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKLEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide

• Length: 1113 bp

>NTDB_id=1058852 ACFXAC_RS19545 WP_053573832.1 3993245..3994357(+) (recF) [Bacillus amyloliquefaciens strain JP5006]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAACTAGAAGGAAGAGTGATGAAGCGAAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTAAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTGTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCTGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	94.054	100	0.941