Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACFXAC_RS16820 Genome accession   NZ_CP170720
Coordinates   3454822..3456207 (-) Length   461 a.a.
NCBI ID   WP_053574011.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3449822..3461207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS16785 (ACFXAC_16785) flgL 3449997..3450914 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ACFXAC_RS16790 (ACFXAC_16790) flgK 3450926..3452443 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  ACFXAC_RS16795 (ACFXAC_16795) - 3452459..3452941 (-) 483 WP_053574009.1 flagellar protein FlgN -
  ACFXAC_RS16800 (ACFXAC_16800) flgM 3452956..3453222 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACFXAC_RS16805 (ACFXAC_16805) - 3453292..3453711 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ACFXAC_RS16810 (ACFXAC_16810) comFC 3453785..3454474 (-) 690 WP_199910801.1 phosphoribosyltransferase family protein Machinery gene
  ACFXAC_RS16815 (ACFXAC_16815) - 3454480..3454764 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACFXAC_RS16820 (ACFXAC_16820) comFA 3454822..3456207 (-) 1386 WP_053574011.1 DEAD/DEAH box helicase Machinery gene
  ACFXAC_RS16825 (ACFXAC_16825) - 3456315..3457163 (-) 849 WP_053574012.1 DegV family protein -
  ACFXAC_RS16830 (ACFXAC_16830) degU 3457261..3457950 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACFXAC_RS16835 (ACFXAC_16835) degS 3458027..3459190 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACFXAC_RS16840 (ACFXAC_16840) - 3459413..3460060 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52672.14 Da        Isoelectric Point: 10.0979

>NTDB_id=1058841 ACFXAC_RS16820 WP_053574011.1 3454822..3456207(-) (comFA) [Bacillus amyloliquefaciens strain JP5006]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQFDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLFWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGIHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1058841 ACFXAC_RS16820 WP_053574011.1 3454822..3456207(-) (comFA) [Bacillus amyloliquefaciens strain JP5006]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTTTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTTTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTATGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCATTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(325-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627

Multiple sequence alignment