Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AABA08_RS04625 Genome accession   NZ_AP028602
Coordinates   920506..921315 (+) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain PF2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 915506..926315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA08_RS04610 (TKY092604_09090) mutY 917228..918403 (+) 1176 WP_000886147.1 A/G-specific adenine glycosylase -
  AABA08_RS04615 (TKY092604_09100) micA 918458..919162 (+) 705 WP_000722076.1 response regulator YycF Regulator
  AABA08_RS04620 (TKY092604_09110) micB 919155..920504 (+) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AABA08_RS04625 (TKY092604_09120) vicX 920506..921315 (+) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  AABA08_RS04630 (TKY092604_09130) relB 921406..921648 (+) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  AABA08_RS04635 (TKY092604_09140) - 921650..921904 (+) 255 WP_001812387.1 type II toxin-antitoxin system RelE family toxin -
  AABA08_RS04640 (TKY092604_09150) - 921951..922725 (+) 775 Protein_918 potassium channel family protein -
  AABA08_RS04645 (TKY092604_09160) - 922988..923974 (-) 987 WP_000204727.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=105881 AABA08_RS04625 WP_001289493.1 920506..921315(+) (vicX) [Streptococcus pneumoniae strain PF2]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=105881 AABA08_RS04625 WP_001289493.1 920506..921315(+) (vicX) [Streptococcus pneumoniae strain PF2]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment