Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACFXAC_RS06890 Genome accession   NZ_CP170720
Coordinates   1343866..1344330 (-) Length   154 a.a.
NCBI ID   WP_015417366.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338866..1349330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS06870 (ACFXAC_06870) - 1339347..1341167 (+) 1821 WP_113971599.1 PAS domain-containing protein -
  ACFXAC_RS06875 (ACFXAC_06875) - 1341148..1342361 (-) 1214 Protein_1301 aminotransferase A -
  ACFXAC_RS06880 (ACFXAC_06880) - 1342562..1342723 (-) 162 WP_007409608.1 hypothetical protein -
  ACFXAC_RS06885 (ACFXAC_06885) cheV 1342912..1343823 (+) 912 WP_039251615.1 chemotaxis protein CheV -
  ACFXAC_RS06890 (ACFXAC_06890) kre 1343866..1344330 (-) 465 WP_015417366.1 YkyB family protein Regulator
  ACFXAC_RS06895 (ACFXAC_06895) - 1344453..1345745 (-) 1293 WP_015239757.1 MFS transporter -
  ACFXAC_RS06900 (ACFXAC_06900) - 1345821..1346315 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  ACFXAC_RS06905 (ACFXAC_06905) - 1346390..1347253 (-) 864 WP_015417367.1 metallophosphoesterase -
  ACFXAC_RS06910 (ACFXAC_06910) fadH 1347398..1348162 (+) 765 WP_015417368.1 2,4-dienoyl-CoA reductase -
  ACFXAC_RS06915 (ACFXAC_06915) - 1348276..1348824 (+) 549 WP_053573390.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17798.62 Da        Isoelectric Point: 10.5281

>NTDB_id=1058804 ACFXAC_RS06890 WP_015417366.1 1343866..1344330(-) (kre) [Bacillus amyloliquefaciens strain JP5006]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAAKRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1058804 ACFXAC_RS06890 WP_015417366.1 1343866..1344330(-) (kre) [Bacillus amyloliquefaciens strain JP5006]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAAAAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.208

100

0.922

Multiple sequence alignment