Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   ACFXAC_RS01685 Genome accession   NZ_CP170720
Coordinates   356371..356535 (+) Length   54 a.a.
NCBI ID   WP_269195032.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 351371..361535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS01680 (ACFXAC_01680) srfAB 353262..356354 (+) 3093 Protein_297 surfactin non-ribosomal peptide synthetase SrfAB -
  ACFXAC_RS01685 (ACFXAC_01685) comS 356371..356535 (+) 165 WP_269195032.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6180.18 Da        Isoelectric Point: 12.0559

>NTDB_id=1058783 ACFXAC_RS01685 WP_269195032.1 356371..356535(+) (comS) [Bacillus amyloliquefaciens strain JP5006]
MRARRNSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=1058783 ACFXAC_RS01685 WP_269195032.1 356371..356535(+) (comS) [Bacillus amyloliquefaciens strain JP5006]
ATGAGAGCGAGGAGGAACAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAAGGGTC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

61.364

81.481

0.5

Multiple sequence alignment