Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ACFW98_RS17850 Genome accession   NZ_CP170719
Coordinates   3690417..3691208 (+) Length   263 a.a.
NCBI ID   WP_047935474.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3685417..3696208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS17825 (ACFW98_17825) - 3687411..3688295 (+) 885 WP_007408548.1 PhzF family phenazine biosynthesis isomerase -
  ACFW98_RS17830 (ACFW98_17830) - 3688372..3688956 (+) 585 WP_007408549.1 nitroreductase -
  ACFW98_RS17835 (ACFW98_17835) - 3688996..3689187 (-) 192 WP_003155508.1 YfhD family protein -
  ACFW98_RS17840 (ACFW98_17840) - 3689258..3689368 (-) 111 WP_003155504.1 YfhE family protein -
  ACFW98_RS17845 (ACFW98_17845) - 3689426..3690325 (-) 900 WP_181467522.1 TIGR01777 family oxidoreductase -
  ACFW98_RS17850 (ACFW98_17850) recX 3690417..3691208 (+) 792 WP_047935474.1 recombination regulator RecX Regulator
  ACFW98_RS17855 (ACFW98_17855) - 3691215..3691529 (+) 315 WP_007408553.1 YfhH family protein -
  ACFW98_RS17860 (ACFW98_17860) - 3691674..3692867 (+) 1194 WP_025284446.1 MFS transporter -
  ACFW98_RS17865 (ACFW98_17865) - 3692907..3693296 (-) 390 WP_039062791.1 DUF2606 family protein -
  ACFW98_RS17870 (ACFW98_17870) - 3693259..3694170 (-) 912 WP_032867735.1 serine protease -
  ACFW98_RS17875 (ACFW98_17875) - 3694317..3694469 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  ACFW98_RS17880 (ACFW98_17880) - 3694593..3694862 (+) 270 WP_003155492.1 YfhJ family protein -
  ACFW98_RS17885 (ACFW98_17885) - 3694994..3695521 (+) 528 WP_032867733.1 SH3 domain-containing protein -
  ACFW98_RS17890 (ACFW98_17890) - 3695607..3695942 (+) 336 WP_007408558.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31052.26 Da        Isoelectric Point: 6.0921

>NTDB_id=1058763 ACFW98_RS17850 WP_047935474.1 3690417..3691208(+) (recX) [Bacillus amyloliquefaciens strain JP5008]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDEFDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYATTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1058763 ACFW98_RS17850 WP_047935474.1 3690417..3691208(+) (recX) [Bacillus amyloliquefaciens strain JP5008]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGTTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGATATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCGGAAGCTTATGCGACCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAAACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGTTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

78.707

100

0.787

Multiple sequence alignment