Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   ACFW98_RS15450 Genome accession   NZ_CP170719
Coordinates   3211651..3211815 (+) Length   54 a.a.
NCBI ID   WP_012116773.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3206651..3216815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS15445 (ACFW98_15445) srfAB 3208596..3211586 (+) 2991 Protein_2993 surfactin non-ribosomal peptide synthetase SrfAB -
  ACFW98_RS15450 (ACFW98_15450) comS 3211651..3211815 (+) 165 WP_012116773.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6153.16 Da        Isoelectric Point: 12.0559

>NTDB_id=1058758 ACFW98_RS15450 WP_012116773.1 3211651..3211815(+) (comS) [Bacillus amyloliquefaciens strain JP5008]
MRARRSSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=1058758 ACFW98_RS15450 WP_012116773.1 3211651..3211815(+) (comS) [Bacillus amyloliquefaciens strain JP5008]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAAGGGTC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

61.364

81.481

0.5

Multiple sequence alignment