Detailed information NTG1058750

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ACFW98_RS13630
• Genome accession: NZ_CP170719
• Coordinates: 2827289..2828401 (+)
• Length: 370 a.a.
• NCBI ID: WP_007409910.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5008
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2822289..2833401

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFW98_RS13605 (ACFW98_13605)	rnpA	2823003..2823353 (-)	351	WP_004392944.1	ribonuclease P protein component	-
ACFW98_RS13610 (ACFW98_13610)	rpmH	2823506..2823640 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
ACFW98_RS13615 (ACFW98_13615)	dnaA	2824262..2825602 (+)	1341	WP_007409908.1	chromosomal replication initiator protein DnaA	-
ACFW98_RS13620 (ACFW98_13620)	dnaN	2825787..2826923 (+)	1137	WP_095352472.1	DNA polymerase III subunit beta	-
ACFW98_RS13625 (ACFW98_13625)	rlbA	2827058..2827273 (+)	216	WP_004392910.1	ribosome maturation protein RlbA	-
ACFW98_RS13630 (ACFW98_13630)	recF	2827289..2828401 (+)	1113	WP_007409910.1	DNA replication/repair protein RecF	Machinery gene
ACFW98_RS13635 (ACFW98_13635)	remB	2828419..2828664 (+)	246	WP_004392908.1	extracellular matrix regulator RemB	-
ACFW98_RS13640 (ACFW98_13640)	gyrB	2828721..2830637 (+)	1917	WP_014720600.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
ACFW98_RS13645 (ACFW98_13645)	gyrA	2830853..2833312 (+)	2460	WP_004392898.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42430.36 Da
• Isoelectric Point: 7.0882

>NTDB_id=1058750 ACFW98_RS13630 WP_007409910.1 2827289..2828401(+) (recF) [Bacillus amyloliquefaciens strain JP5008]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide

• Length: 1113 bp

>NTDB_id=1058750 ACFW98_RS13630 WP_007409910.1 2827289..2828401(+) (recF) [Bacillus amyloliquefaciens strain JP5008]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGAAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTAAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTGTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCTGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	94.324	100	0.943