Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACFW98_RS06985 Genome accession   NZ_CP170719
Coordinates   1495313..1496065 (-) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1490313..1501065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS06960 (ACFW98_06960) mreC 1490749..1491612 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  ACFW98_RS06965 (ACFW98_06965) mreB 1491643..1492656 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACFW98_RS06970 (ACFW98_06970) radC 1492748..1493443 (-) 696 WP_007408165.1 DNA repair protein RadC -
  ACFW98_RS06975 (ACFW98_06975) - 1493475..1494044 (-) 570 WP_015417926.1 nucleoside triphosphate pyrophosphatase -
  ACFW98_RS06980 (ACFW98_06980) - 1494185..1495186 (-) 1002 WP_015417927.1 SPOR domain-containing protein -
  ACFW98_RS06985 (ACFW98_06985) comC 1495313..1496065 (-) 753 WP_012118107.1 A24 family peptidase Machinery gene
  ACFW98_RS06990 (ACFW98_06990) - 1496205..1497497 (-) 1293 WP_327955009.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ACFW98_RS06995 (ACFW98_06995) - 1497556..1500198 (-) 2643 WP_015417930.1 valine--tRNA ligase -
  ACFW98_RS07000 (ACFW98_07000) - 1500651..1500842 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=1058728 ACFW98_RS06985 WP_012118107.1 1495313..1496065(-) (comC) [Bacillus amyloliquefaciens strain JP5008]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1058728 ACFW98_RS06985 WP_012118107.1 1495313..1496065(-) (comC) [Bacillus amyloliquefaciens strain JP5008]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCTGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment