Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACFW98_RS05555 Genome accession   NZ_CP170719
Coordinates   1244654..1245454 (-) Length   266 a.a.
NCBI ID   WP_015417798.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1239654..1250454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS05525 (ACFW98_05525) - 1240269..1240832 (+) 564 WP_395096877.1 DUF1232 domain-containing protein -
  ACFW98_RS05530 (ACFW98_05530) - 1241123..1241260 (+) 138 WP_014470646.1 hypothetical protein -
  ACFW98_RS05535 (ACFW98_05535) - 1241354..1242472 (+) 1119 WP_064107221.1 NADH-dependent flavin oxidoreductase -
  ACFW98_RS05540 (ACFW98_05540) - 1242598..1242810 (+) 213 WP_007408362.1 spore germination protein -
  ACFW98_RS05545 (ACFW98_05545) - 1242936..1243148 (+) 213 WP_003153181.1 spore germination protein -
  ACFW98_RS05550 (ACFW98_05550) alr 1243324..1244505 (+) 1182 WP_012117960.1 alanine racemase -
  ACFW98_RS05555 (ACFW98_05555) spo0A 1244654..1245454 (-) 801 WP_015417798.1 sporulation transcription factor Spo0A Regulator
  ACFW98_RS05560 (ACFW98_05560) spoIVB 1245735..1247015 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  ACFW98_RS05565 (ACFW98_05565) recN 1247179..1248909 (-) 1731 WP_015417799.1 DNA repair protein RecN Machinery gene
  ACFW98_RS05570 (ACFW98_05570) ahrC 1248941..1249390 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  ACFW98_RS05575 (ACFW98_05575) - 1249487..1250332 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29657.13 Da        Isoelectric Point: 6.1630

>NTDB_id=1058712 ACFW98_RS05555 WP_015417798.1 1244654..1245454(-) (spo0A) [Bacillus amyloliquefaciens strain JP5008]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRNQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1058712 ACFW98_RS05555 WP_015417798.1 1244654..1245454(-) (spo0A) [Bacillus amyloliquefaciens strain JP5008]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCAGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAACCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACTGCAAGCCGTGTAGAACGGG
CCATCCGGCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATCGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAGCCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.757

100

0.951

Multiple sequence alignment