Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACFW98_RS04485 Genome accession   NZ_CP170719
Coordinates   998829..999437 (+) Length   202 a.a.
NCBI ID   WP_395096856.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 993829..1004437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS04445 (ACFW98_04445) - 994881..995387 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  ACFW98_RS04450 (ACFW98_04450) - 995526..995939 (+) 414 WP_395096855.1 Hsp20/alpha crystallin family protein -
  ACFW98_RS04455 (ACFW98_04455) - 995969..996403 (-) 435 WP_015417700.1 YppG family protein -
  ACFW98_RS04460 (ACFW98_04460) - 996590..996772 (+) 183 WP_003153532.1 YppF family protein -
  ACFW98_RS04465 (ACFW98_04465) - 996811..997179 (-) 369 WP_007409492.1 YppE family protein -
  ACFW98_RS04470 (ACFW98_04470) - 997225..997470 (-) 246 WP_012117836.1 DUF5446 family protein -
  ACFW98_RS04475 (ACFW98_04475) sspM 997677..997781 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  ACFW98_RS04480 (ACFW98_04480) - 997825..998787 (-) 963 WP_033574711.1 DUF2515 domain-containing protein -
  ACFW98_RS04485 (ACFW98_04485) recU 998829..999437 (+) 609 WP_395096856.1 Holliday junction resolvase RecU Machinery gene
  ACFW98_RS04490 (ACFW98_04490) - 999476..1002259 (+) 2784 WP_395096857.1 PBP1A family penicillin-binding protein -
  ACFW98_RS04495 (ACFW98_04495) - 1002337..1002828 (-) 492 WP_033574712.1 YpoC family protein -
  ACFW98_RS04500 (ACFW98_04500) nth 1002825..1003484 (-) 660 WP_007612187.1 endonuclease III -
  ACFW98_RS04505 (ACFW98_04505) dnaD 1003503..1004201 (-) 699 WP_033574713.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23735.86 Da        Isoelectric Point: 9.5779

>NTDB_id=1058711 ACFW98_RS04485 WP_395096856.1 998829..999437(+) (recU) [Bacillus amyloliquefaciens strain JP5008]
MIRYPNGKTFQPNKTVSSQNSQKRFHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLHNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1058711 ACFW98_RS04485 WP_395096856.1 998829..999437(+) (recU) [Bacillus amyloliquefaciens strain JP5008]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTTCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCATAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment