Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DK42_RS00270 Genome accession   NZ_CP007571
Coordinates   34227..34988 (+) Length   253 a.a.
NCBI ID   WP_001266269.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS2-NM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 29227..39988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK42_RS00255 (DK42_00255) - 30525..31862 (+) 1338 WP_000746075.1 CHAP domain-containing protein -
  DK42_RS00260 (DK42_00260) - 31986..32954 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  DK42_RS00265 (DK42_00265) - 33062..34237 (+) 1176 WP_000171460.1 pyridoxal phosphate-dependent aminotransferase -
  DK42_RS00270 (DK42_00270) recO 34227..34988 (+) 762 WP_001266269.1 DNA repair protein RecO Machinery gene
  DK42_RS00275 (DK42_00275) - 35121..36593 (+) 1473 WP_041325923.1 IS1182 family transposase -
  DK42_RS00280 (DK42_00280) - 36611..37489 (+) 879 WP_000420130.1 type II CAAX endopeptidase family protein -
  DK42_RS00285 (DK42_00285) plsX 37567..38559 (+) 993 WP_041330176.1 phosphate acyltransferase PlsX -
  DK42_RS00290 (DK42_00290) - 38570..38809 (+) 240 WP_000085641.1 phosphopantetheine-binding protein -
  DK42_RS00295 (DK42_00295) purC 38933..39637 (+) 705 WP_001064658.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29668.10 Da        Isoelectric Point: 6.2989

>NTDB_id=105871 DK42_RS00270 WP_001266269.1 34227..34988(+) (recO) [Streptococcus agalactiae strain GBS2-NM]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
INSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=105871 DK42_RS00270 WP_001266269.1 34227..34988(+) (recO) [Streptococcus agalactiae strain GBS2-NM]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ATTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.113

98.024

0.628

Multiple sequence alignment