Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ACFW98_RS00970 Genome accession   NZ_CP170719
Coordinates   169529..170125 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 164529..175125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS00940 (ACFW98_00940) - 164742..165197 (+) 456 WP_033574618.1 flavodoxin -
  ACFW98_RS00945 (ACFW98_00945) dapD 165279..165989 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ACFW98_RS00950 (ACFW98_00950) - 166060..167184 (+) 1125 WP_094032400.1 N-acetyldiaminopimelate deacetylase -
  ACFW98_RS00955 (ACFW98_00955) - 167245..167490 (+) 246 WP_003154596.1 YkuS family protein -
  ACFW98_RS00960 (ACFW98_00960) - 167524..168330 (-) 807 WP_060675394.1 mechanosensitive ion channel family protein -
  ACFW98_RS00965 (ACFW98_00965) - 168619..169077 (+) 459 WP_395096705.1 TlpA disulfide reductase family protein -
  ACFW98_RS00970 (ACFW98_00970) rok 169529..170125 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  ACFW98_RS00975 (ACFW98_00975) - 170146..171138 (-) 993 WP_395096706.1 sporulation protein -
  ACFW98_RS00980 (ACFW98_00980) - 171284..171886 (+) 603 WP_039251605.1 molybdenum cofactor guanylyltransferase -
  ACFW98_RS00985 (ACFW98_00985) - 171938..172957 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  ACFW98_RS00990 (ACFW98_00990) glp 172975..174267 (+) 1293 WP_077391926.1 gephyrin-like molybdotransferase Glp -
  ACFW98_RS00995 (ACFW98_00995) mobB 174228..174749 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=1058705 ACFW98_RS00970 WP_012117447.1 169529..170125(+) (rok) [Bacillus amyloliquefaciens strain JP5008]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1058705 ACFW98_RS00970 WP_012117447.1 169529..170125(+) (rok) [Bacillus amyloliquefaciens strain JP5008]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCTGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment