Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACFW98_RS00870 Genome accession   NZ_CP170719
Coordinates   153656..154120 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 148656..159120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS00850 (ACFW98_00850) - 149136..150956 (+) 1821 WP_395096697.1 PAS domain-containing protein -
  ACFW98_RS00855 (ACFW98_00855) - 150937..152150 (-) 1214 Protein_158 aminotransferase A -
  ACFW98_RS00860 (ACFW98_00860) - 152351..152512 (-) 162 WP_007409608.1 hypothetical protein -
  ACFW98_RS00865 (ACFW98_00865) cheV 152701..153612 (+) 912 WP_395096698.1 chemotaxis protein CheV -
  ACFW98_RS00870 (ACFW98_00870) kre 153656..154120 (-) 465 WP_003154622.1 YkyB family protein Regulator
  ACFW98_RS00875 (ACFW98_00875) - 154243..155535 (-) 1293 WP_395096699.1 MFS transporter -
  ACFW98_RS00880 (ACFW98_00880) - 155611..156105 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  ACFW98_RS00885 (ACFW98_00885) - 156180..157043 (-) 864 WP_395096701.1 metallophosphoesterase -
  ACFW98_RS00890 (ACFW98_00890) fadH 157188..157952 (+) 765 WP_395096702.1 2,4-dienoyl-CoA reductase -
  ACFW98_RS00895 (ACFW98_00895) - 158066..158614 (+) 549 WP_094032398.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=1058704 ACFW98_RS00870 WP_003154622.1 153656..154120(-) (kre) [Bacillus amyloliquefaciens strain JP5008]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1058704 ACFW98_RS00870 WP_003154622.1 153656..154120(-) (kre) [Bacillus amyloliquefaciens strain JP5008]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment