Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACFXAA_RS19425 Genome accession   NZ_CP170717
Coordinates   3944325..3945125 (+) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3939325..3950125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS19405 (ACFXAA_19405) - 3939447..3940292 (+) 846 WP_395135508.1 TlyA family RNA methyltransferase -
  ACFXAA_RS19410 (ACFXAA_19410) ahrC 3940389..3940838 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  ACFXAA_RS19415 (ACFXAA_19415) recN 3940870..3942600 (+) 1731 WP_007408359.1 DNA repair protein RecN Machinery gene
  ACFXAA_RS19420 (ACFXAA_19420) spoIVB 3942764..3944044 (+) 1281 WP_014418352.1 SpoIVB peptidase -
  ACFXAA_RS19425 (ACFXAA_19425) spo0A 3944325..3945125 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  ACFXAA_RS19430 (ACFXAA_19430) alr 3945274..3946455 (-) 1182 WP_012117960.1 alanine racemase -
  ACFXAA_RS19435 (ACFXAA_19435) - 3946631..3946843 (-) 213 WP_003153181.1 spore germination protein -
  ACFXAA_RS19440 (ACFXAA_19440) - 3946969..3947181 (-) 213 WP_007408362.1 spore germination protein -
  ACFXAA_RS19445 (ACFXAA_19445) - 3947307..3948425 (-) 1119 WP_061861489.1 NADH-dependent flavin oxidoreductase -
  ACFXAA_RS19450 (ACFXAA_19450) - 3948519..3948656 (-) 138 WP_014470646.1 hypothetical protein -
  ACFXAA_RS19455 (ACFXAA_19455) - 3948953..3949585 (-) 633 WP_007408365.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=1058701 ACFXAA_RS19425 WP_003153177.1 3944325..3945125(+) (spo0A) [Bacillus amyloliquefaciens strain JP5014]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1058701 ACFXAA_RS19425 WP_003153177.1 3944325..3945125(+) (spo0A) [Bacillus amyloliquefaciens strain JP5014]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCAGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGTATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAGCCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment