Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACFXAA_RS18915 Genome accession   NZ_CP170717
Coordinates   3857790..3858557 (+) Length   255 a.a.
NCBI ID   WP_395135494.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3852790..3863557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS18885 (ACFXAA_18885) - 3853073..3855205 (+) 2133 WP_007408284.1 HD family phosphohydrolase -
  ACFXAA_RS18890 (ACFXAA_18890) ybeY 3855206..3855679 (+) 474 WP_395135492.1 rRNA maturation RNase YbeY -
  ACFXAA_RS18895 (ACFXAA_18895) - 3855660..3856034 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  ACFXAA_RS18900 (ACFXAA_18900) - 3856158..3856568 (+) 411 WP_003152976.1 cytidine deaminase -
  ACFXAA_RS18905 (ACFXAA_18905) era 3856549..3857454 (+) 906 WP_007408285.1 GTPase Era -
  ACFXAA_RS18910 (ACFXAA_18910) - 3857610..3857753 (+) 144 WP_007408286.1 YqzL family protein -
  ACFXAA_RS18915 (ACFXAA_18915) recO 3857790..3858557 (+) 768 WP_395135494.1 DNA repair protein RecO Machinery gene
  ACFXAA_RS18920 (ACFXAA_18920) glyQ 3858859..3859746 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  ACFXAA_RS18925 (ACFXAA_18925) glyS 3859739..3861778 (+) 2040 WP_061860718.1 glycine--tRNA ligase subunit beta -
  ACFXAA_RS18930 (ACFXAA_18930) ccpN 3861879..3862517 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  ACFXAA_RS18935 (ACFXAA_18935) - 3862543..3863355 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29274.88 Da        Isoelectric Point: 8.5625

>NTDB_id=1058692 ACFXAA_RS18915 WP_395135494.1 3857790..3858557(+) (recO) [Bacillus amyloliquefaciens strain JP5014]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLLQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1058692 ACFXAA_RS18915 WP_395135494.1 3857790..3858557(+) (recO) [Bacillus amyloliquefaciens strain JP5014]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTATTGCAAAGAACATCAGGACTCGGTACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGTTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAATGAAATTAAACGGGTCATTGATCTGTATTACGAAGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.627

100

0.886

Multiple sequence alignment