Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACFXAA_RS18030 Genome accession   NZ_CP170717
Coordinates   3700352..3701104 (+) Length   250 a.a.
NCBI ID   WP_061860763.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3695352..3706104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS18015 (ACFXAA_18015) - 3695575..3695766 (-) 192 WP_003152639.1 hypothetical protein -
  ACFXAA_RS18020 (ACFXAA_18020) - 3696219..3698861 (+) 2643 WP_395135467.1 valine--tRNA ligase -
  ACFXAA_RS18025 (ACFXAA_18025) - 3698920..3700212 (+) 1293 WP_061860764.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ACFXAA_RS18030 (ACFXAA_18030) comC 3700352..3701104 (+) 753 WP_061860763.1 A24 family peptidase Machinery gene
  ACFXAA_RS18035 (ACFXAA_18035) - 3701231..3702232 (+) 1002 WP_061860762.1 SPOR domain-containing protein -
  ACFXAA_RS18040 (ACFXAA_18040) - 3702373..3702942 (+) 570 WP_015417926.1 nucleoside triphosphate pyrophosphatase -
  ACFXAA_RS18045 (ACFXAA_18045) radC 3702974..3703669 (+) 696 WP_007408165.1 DNA repair protein RadC -
  ACFXAA_RS18050 (ACFXAA_18050) mreB 3703761..3704774 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACFXAA_RS18055 (ACFXAA_18055) mreC 3704805..3705668 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27253.96 Da        Isoelectric Point: 9.4293

>NTDB_id=1058685 ACFXAA_RS18030 WP_061860763.1 3700352..3701104(+) (comC) [Bacillus amyloliquefaciens strain JP5014]
MFLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1058685 ACFXAA_RS18030 WP_061860763.1 3700352..3701104(+) (comC) [Bacillus amyloliquefaciens strain JP5014]
GTGTTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCTGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment