Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   ACFXAA_RS09535 Genome accession   NZ_CP170717
Coordinates   1986325..1986489 (-) Length   54 a.a.
NCBI ID   WP_269434478.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1981325..1991489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS09535 (ACFXAA_09535) comS 1986325..1986489 (-) 165 WP_269434478.1 competence protein ComS Regulator
  ACFXAA_RS09540 (ACFXAA_09540) srfAB 1986554..1989598 (-) 3045 Protein_1866 surfactin non-ribosomal peptide synthetase SrfAB -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6194.21 Da        Isoelectric Point: 12.0559

>NTDB_id=1058654 ACFXAA_RS09535 WP_269434478.1 1986325..1986489(-) (comS) [Bacillus amyloliquefaciens strain JP5014]
MRARRNSSLNRSDKRLIRTIILFPQHSAGCISLISSDRPARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=1058654 ACFXAA_RS09535 WP_269434478.1 1986325..1986489(-) (comS) [Bacillus amyloliquefaciens strain JP5014]
ATGAGAGCGAGGAGGAACAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAACCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAAGGGTC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

59.091

81.481

0.481

Multiple sequence alignment