Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACFXAA_RS09340 Genome accession   NZ_CP170717
Coordinates   1938445..1939398 (-) Length   317 a.a.
NCBI ID   WP_015239156.1    Uniprot ID   A0AAP3YGS2
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1933445..1944398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS09320 (ACFXAA_09320) - 1934324..1935748 (+) 1425 WP_033575079.1 MDR family MFS transporter -
  ACFXAA_RS09325 (ACFXAA_09325) - 1935790..1936734 (-) 945 WP_007410275.1 siderophore ABC transporter substrate-binding protein -
  ACFXAA_RS09330 (ACFXAA_09330) - 1936756..1937514 (-) 759 WP_015416812.1 ABC transporter ATP-binding protein -
  ACFXAA_RS09335 (ACFXAA_09335) - 1937508..1938455 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  ACFXAA_RS09340 (ACFXAA_09340) ceuB 1938445..1939398 (-) 954 WP_015239156.1 ABC transporter permease Machinery gene
  ACFXAA_RS09345 (ACFXAA_09345) - 1939812..1941176 (+) 1365 WP_033575080.1 aspartate kinase -
  ACFXAA_RS09350 (ACFXAA_09350) - 1941256..1941366 (+) 111 WP_370529518.1 YjcZ family sporulation protein -
  ACFXAA_RS09355 (ACFXAA_09355) phrC 1941513..1941632 (-) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ACFXAA_RS09360 (ACFXAA_09360) rapC 1941616..1942764 (-) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  ACFXAA_RS09365 (ACFXAA_09365) - 1942917..1944350 (-) 1434 WP_015416810.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=1058651 ACFXAA_RS09340 WP_015239156.1 1938445..1939398(-) (ceuB) [Bacillus amyloliquefaciens strain JP5014]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1058651 ACFXAA_RS09340 WP_015239156.1 1938445..1939398(-) (ceuB) [Bacillus amyloliquefaciens strain JP5014]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCGGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGATTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATATGACCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment