Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACFXAA_RS06095 Genome accession   NZ_CP170717
Coordinates   1316036..1316614 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1311036..1321614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS06060 (ACFXAA_06060) - 1311228..1312697 (+) 1470 WP_156240307.1 sodium:solute symporter -
  ACFXAA_RS06065 (ACFXAA_06065) - 1312739..1313056 (+) 318 WP_003155166.1 YbjQ family protein -
  ACFXAA_RS06070 (ACFXAA_06070) - 1313089..1313358 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  ACFXAA_RS06075 (ACFXAA_06075) - 1313554..1314264 (+) 711 WP_033574494.1 YrpD family protein -
  ACFXAA_RS06080 (ACFXAA_06080) - 1314493..1315002 (-) 510 WP_015417169.1 MepB family protein -
  ACFXAA_RS06085 (ACFXAA_06085) - 1315125..1315496 (-) 372 WP_040238319.1 iron chaperone -
  ACFXAA_RS06090 (ACFXAA_06090) - 1315523..1315891 (-) 369 WP_012117235.1 iron chaperone -
  ACFXAA_RS06095 (ACFXAA_06095) comK 1316036..1316614 (-) 579 WP_003155179.1 competence protein ComK Regulator
  ACFXAA_RS06100 (ACFXAA_06100) - 1316930..1317163 (+) 234 WP_007610478.1 IDEAL domain-containing protein -
  ACFXAA_RS06105 (ACFXAA_06105) - 1317194..1318051 (-) 858 WP_007610477.1 SDR family oxidoreductase -
  ACFXAA_RS06110 (ACFXAA_06110) - 1318176..1319699 (+) 1524 WP_156240306.1 FAD-dependent oxidoreductase -
  ACFXAA_RS06115 (ACFXAA_06115) - 1319932..1320306 (+) 375 Protein_1215 protoglobin domain-containing protein -
  ACFXAA_RS06120 (ACFXAA_06120) - 1320316..1321113 (+) 798 WP_371265894.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=1058644 ACFXAA_RS06095 WP_003155179.1 1316036..1316614(-) (comK) [Bacillus amyloliquefaciens strain JP5014]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1058644 ACFXAA_RS06095 WP_003155179.1 1316036..1316614(-) (comK) [Bacillus amyloliquefaciens strain JP5014]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment