Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACFXAA_RS04245 Genome accession   NZ_CP170717
Coordinates   975818..976282 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 970818..981282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS04220 (ACFXAA_04220) - 971324..971872 (-) 549 WP_031378778.1 hypothetical protein -
  ACFXAA_RS04225 (ACFXAA_04225) fadH 971986..972750 (-) 765 WP_061861423.1 2,4-dienoyl-CoA reductase -
  ACFXAA_RS04230 (ACFXAA_04230) - 972895..973758 (+) 864 WP_060675295.1 metallophosphoesterase -
  ACFXAA_RS04235 (ACFXAA_04235) - 973833..974327 (+) 495 WP_088462390.1 L,D-transpeptidase family protein -
  ACFXAA_RS04240 (ACFXAA_04240) - 974403..975695 (+) 1293 WP_015239757.1 MFS transporter -
  ACFXAA_RS04245 (ACFXAA_04245) kre 975818..976282 (+) 465 WP_003154622.1 YkyB family protein Regulator
  ACFXAA_RS04250 (ACFXAA_04250) cheV 976325..977236 (-) 912 WP_039251615.1 chemotaxis protein CheV -
  ACFXAA_RS04255 (ACFXAA_04255) - 977425..977586 (+) 162 WP_007409608.1 hypothetical protein -
  ACFXAA_RS04260 (ACFXAA_04260) - 977787..979000 (+) 1214 Protein_845 aminotransferase A -
  ACFXAA_RS04265 (ACFXAA_04265) - 978981..980801 (-) 1821 WP_015417363.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=1058633 ACFXAA_RS04245 WP_003154622.1 975818..976282(+) (kre) [Bacillus amyloliquefaciens strain JP5014]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1058633 ACFXAA_RS04245 WP_003154622.1 975818..976282(+) (kre) [Bacillus amyloliquefaciens strain JP5014]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment