Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ACFXAA_RS04140 Genome accession   NZ_CP170717
Coordinates   958241..958837 (-) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 953241..963837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS04115 (ACFXAA_04115) mobB 953617..954138 (-) 522 WP_015417376.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  ACFXAA_RS04120 (ACFXAA_04120) glp 954099..955391 (-) 1293 WP_103526930.1 gephyrin-like molybdotransferase Glp -
  ACFXAA_RS04125 (ACFXAA_04125) - 955409..956428 (-) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  ACFXAA_RS04130 (ACFXAA_04130) - 956480..957082 (-) 603 WP_015239766.1 molybdenum cofactor guanylyltransferase -
  ACFXAA_RS04135 (ACFXAA_04135) - 957228..958220 (+) 993 WP_012117448.1 hypothetical protein -
  ACFXAA_RS04140 (ACFXAA_04140) rok 958241..958837 (-) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  ACFXAA_RS04145 (ACFXAA_04145) - 959288..959746 (-) 459 WP_060675395.1 TlpA disulfide reductase family protein -
  ACFXAA_RS04150 (ACFXAA_04150) - 960035..960841 (+) 807 WP_060675394.1 mechanosensitive ion channel family protein -
  ACFXAA_RS04155 (ACFXAA_04155) - 960972..962324 (-) 1353 WP_060675290.1 IS1182 family transposase -
  ACFXAA_RS04160 (ACFXAA_04160) - 962455..962700 (-) 246 WP_003154596.1 YkuS family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=1058632 ACFXAA_RS04140 WP_012117447.1 958241..958837(-) (rok) [Bacillus amyloliquefaciens strain JP5014]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1058632 ACFXAA_RS04140 WP_012117447.1 958241..958837(-) (rok) [Bacillus amyloliquefaciens strain JP5014]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCTGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment