Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACFYH6_RS04505 Genome accession   NZ_CP170704
Coordinates   965080..966015 (+) Length   311 a.a.
NCBI ID   WP_316344229.1    Uniprot ID   -
Organism   Clostridium sp. HCS.1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 960080..971015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFYH6_RS04485 (ACFYH6_04485) - 961708..962706 (-) 999 WP_416179624.1 methyl-accepting chemotaxis protein -
  ACFYH6_RS04490 (ACFYH6_04490) - 962708..963433 (-) 726 WP_416179623.1 DUF2225 domain-containing protein -
  ACFYH6_RS04495 (ACFYH6_04495) - 963590..964381 (+) 792 WP_416179622.1 GTP pyrophosphokinase -
  ACFYH6_RS04500 (ACFYH6_04500) - 964454..964738 (-) 285 WP_316344228.1 hypothetical protein -
  ACFYH6_RS04505 (ACFYH6_04505) ceuB 965080..966015 (+) 936 WP_316344229.1 ABC transporter permease Machinery gene
  ACFYH6_RS04510 (ACFYH6_04510) - 966015..966968 (+) 954 WP_416179621.1 iron chelate uptake ABC transporter family permease subunit -
  ACFYH6_RS04515 (ACFYH6_04515) - 966965..967720 (+) 756 WP_316344232.1 ABC transporter ATP-binding protein -
  ACFYH6_RS04520 (ACFYH6_04520) - 967772..968719 (+) 948 WP_416179620.1 siderophore ABC transporter substrate-binding protein -
  ACFYH6_RS04525 (ACFYH6_04525) - 968936..969478 (+) 543 WP_416179619.1 NADH peroxidase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 33836.89 Da        Isoelectric Point: 10.3204

>NTDB_id=1058603 ACFYH6_RS04505 WP_316344229.1 965080..966015(+) (ceuB) [Clostridium sp. HCS.1]
MTKKSLLAITIILSVISIFIGVSNINILNLSSSDIEVLMISRFPRLLSILVAGMGMSISGVIMQQISNNKFISPSTAATV
DSAKLGVLFSLIIFSSANIFQKMMLSFVFSLAGTFIFMTILKKIKIKNVIFIPLVGIMLGNVIGSITDFFAYKYNLNQSM
GAFLQGNFSTVLKGNYEILYLSIPLLIIAFSYVHKFTLAGMGEEMSVSLGLNYKRVTNLGVVIVAIISSLVVITVGSIPF
VGLIIPNIVSIWKGDNLKNNMPIVALLGASFVLGCDIISRLIIAPYEIPIDLTIGVIGAVIFLYLIFRRNK

Nucleotide


Download         Length: 936 bp        

>NTDB_id=1058603 ACFYH6_RS04505 WP_316344229.1 965080..966015(+) (ceuB) [Clostridium sp. HCS.1]
ATGACTAAAAAATCTTTATTGGCTATTACTATTATCTTATCAGTAATATCCATCTTTATTGGAGTGTCTAATATAAACAT
ATTGAATTTAAGTTCTTCAGATATAGAAGTTCTTATGATAAGTAGGTTTCCTCGGTTGCTAAGTATATTAGTTGCAGGTA
TGGGAATGAGTATAAGTGGTGTTATTATGCAACAAATAAGTAATAACAAATTTATTTCACCTAGTACAGCGGCAACTGTA
GACTCAGCAAAATTAGGAGTTTTATTTTCTTTAATTATATTTTCATCAGCTAATATATTTCAAAAAATGATGCTGTCTTT
TGTATTTTCATTAGCAGGAACATTTATTTTCATGACTATTTTGAAGAAGATAAAAATAAAAAATGTTATTTTTATACCAT
TAGTTGGTATTATGTTAGGAAATGTAATAGGATCAATAACAGATTTTTTTGCATATAAGTACAATTTAAATCAAAGTATG
GGTGCATTTTTGCAAGGAAATTTTTCAACGGTATTAAAGGGAAATTATGAAATACTATATTTAAGCATTCCGCTATTAAT
TATAGCATTTTCATATGTACATAAATTTACCTTAGCTGGTATGGGAGAAGAAATGTCAGTAAGCCTTGGACTAAATTATA
AGAGAGTAACTAATCTAGGAGTTGTAATAGTAGCTATAATTTCATCATTAGTTGTAATTACTGTAGGTAGCATTCCTTTT
GTAGGACTAATAATACCTAATATAGTTTCTATATGGAAAGGGGACAACTTAAAGAACAATATGCCAATAGTTGCACTTCT
TGGAGCAAGTTTTGTATTGGGATGCGATATTATAAGTCGTCTAATAATTGCCCCTTATGAAATACCTATAGATTTAACTA
TTGGAGTTATTGGAGCTGTAATATTCCTTTATTTAATATTTAGGAGGAATAAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.16

100

0.505

Multiple sequence alignment