Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   ACFDA4_RS00200 Genome accession   NZ_CP170661
Coordinates   46108..47457 (-) Length   449 a.a.
NCBI ID   WP_000815640.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CCARM 3A686     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 37685..53122 46108..47457 within 0


Gene organization within MGE regions


Location: 37685..53122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDA4_RS00160 (ACFDA4_00160) mecA 37685..39697 (-) 2013 Protein_29 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -
  ACFDA4_RS00165 (ACFDA4_00165) - 39794..40780 (+) 987 WP_001549960.1 beta-lactam sensor/signal transducer MecR1 -
  ACFDA4_RS00170 (ACFDA4_00170) - 40767..41012 (+) 246 Protein_31 type I restriction enzyme endonuclease domain-containing protein -
  ACFDA4_RS00175 (ACFDA4_00175) - 41003..42615 (-) 1613 Protein_32 IS1182 family transposase -
  ACFDA4_RS00180 (ACFDA4_00180) - 42664..43171 (-) 508 Protein_33 DUF1643 domain-containing protein -
  ACFDA4_RS00185 (ACFDA4_00185) - 43186..43497 (-) 312 WP_000700851.1 DUF960 family protein -
  ACFDA4_RS00190 (ACFDA4_00190) - 43584..43934 (-) 351 WP_000849672.1 SAUGI family uracil-DNA glycosylase inhibitor -
  ACFDA4_RS00195 (ACFDA4_00195) ccrB 44457..46085 (-) 1629 Protein_36 cassette chromosome recombinase CcrB -
  ACFDA4_RS00200 (ACFDA4_00200) ccrA 46108..47457 (-) 1350 WP_000815640.1 cassette chromosome recombinase CcrA Machinery gene
  ACFDA4_RS00205 (ACFDA4_00205) cch1 47691..49479 (-) 1789 Protein_38 cassette chromosome replicative helicase -
  ACFDA4_RS00210 (ACFDA4_00210) ssb 49479..49769 (-) 291 WP_001036438.1 cassette chromosome ssDNA-binding protein -
  ACFDA4_RS00215 (ACFDA4_00215) - 49908..50957 (+) 1050 WP_000613248.1 hypothetical protein -
  ACFDA4_RS00220 (ACFDA4_00220) - 51630..51800 (+) 171 WP_391039259.1 RNA-binding domain-containing protein -
  ACFDA4_RS00225 (ACFDA4_00225) - 51748..52995 (+) 1248 WP_391039261.1 ATP-binding protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52663.34 Da        Isoelectric Point: 9.9639

>NTDB_id=1058562 ACFDA4_RS00200 WP_000815640.1 46108..47457(-) (ccrA) [Staphylococcus epidermidis strain CCARM 3A686]
MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQITQLIQQGQCDILCCYRLNRLHRN
LKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIFISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYH
NGTFIINQNESPTVKAVFNYYIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASRFVCDFKGINAQTLEDKVLEV
CRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLIEKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHIIQ
NIIQKRFTLNILYPYIETIHITKDKNLIGIYFKNEPLNIVNQTMQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1058562 ACFDA4_RS00200 WP_000815640.1 46108..47457(-) (ccrA) [Staphylococcus epidermidis strain CCARM 3A686]
ATGAAACAAGTCATAGGCTATTTACGTCAAAGTACGATGAAACAACAATCTCTTGCAGCACAGAAACAAGCTATCGAAGC
AATAGCCGAAAAACATCATATTCAACATATCAACTTTTATAGCGACAAACAATCAGGTCGCAAAGATAATCGTAGTGGGT
ATCGACAAATAACACAATTAATTCAACAAGGACAGTGTGACATATTATGCTGTTATCGTCTTAATAGGTTGCATCGTAAT
CTGAAAAATGCATTAAAACTCATCAAATTATGTCAAACGTACCATGTTCATATCTTAAGCGTACATGATGGTTACTTTGA
TATGGATCAAGCTTTCGACCGACTCAAGCTTAATATCTTCATCAGTTTAGCCGAACTTGAATCGGATAACATTGGAGAAC
AAGTCAGAAATGGGCTTCAAGAAAAAGCAAAGCAAGGTCGATTGATTACAACACATGCACCTTTTGGTTACGAATATCAC
AACGGAACATTCATCATCAATCAAAATGAGTCACCAACGGTAAAGGCTGTATTCAATTATTACATTAAAGGTCATGGTTA
TAAGAAAATTGCACAGTTATTAGAAGAAGATAACACGTATATCAATCGACAACCCTATCAAGTTCGTAACATTATCATCA
ATCCTAATTATTGTGGTCGTGTCAACAATCAATATGGCCAATTCGACAATATGTTTCCTTCTATTGTTTCCACAAGTATA
TATGAGCAAGCGCAGAGACTTCGATTGCAAAAACAAACCAAACAGACACCTTCGGATAATCAACTCAAACAAAAAATCAA
ATGCCCATGTTGTAATGCAACACTTACAAATATGACCATTAGAAAAAAGAATCATACATTACGTTACTACGTCTGTCCTA
AAAACATGAATGCTTCACGCTTTGTCTGTGATTTTAAAGGCATCAATGCACAAACACTTGAAGATAAAGTATTAGAAGTG
TGCCGAGACTTTTATCAAAATCAACGCATCTACACAAAAATTAAAAGTGCGATTGACAAACGCATCAAAAGACAAAGAAA
CATAGAAAAACATCACACATTGACTCAAGAACAACTGATAGAAAAGTTGGCACAAGGCATCATTGATGCAGAAACGTTCA
GAGAGCAAACACAATCATTACGTCAACAACCGCAACGCACTACATCTATCAATGGGCATCAAATACAACACATCATTCAA
AATATTATTCAAAAACGTTTCACGTTAAACATATTGTACCCCTATATTGAAACCATTCACATTACGAAAGATAAAAATCT
TATAGGAATCTATTTCAAAAATGAACCACTCAATATTGTCAATCAAACCATGCAATCATCGATTGCATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)

Recombinase (Recombinase)

(169-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus N315

97.55

100

0.976
  ccrA Staphylococcus aureus COL

75.947

100

0.759

Multiple sequence alignment