Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ACFXAD_RS13540 Genome accession   NZ_CP170653
Coordinates   2802238..2802834 (-) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2797238..2807834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS13515 (ACFXAD_13515) mobB 2797614..2798135 (-) 522 WP_015417376.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  ACFXAD_RS13520 (ACFXAD_13520) glp 2798096..2799388 (-) 1293 WP_015417375.1 gephyrin-like molybdotransferase Glp -
  ACFXAD_RS13525 (ACFXAD_13525) - 2799406..2800425 (-) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  ACFXAD_RS13530 (ACFXAD_13530) - 2800477..2801079 (-) 603 WP_015239766.1 molybdenum cofactor guanylyltransferase -
  ACFXAD_RS13535 (ACFXAD_13535) - 2801225..2802217 (+) 993 WP_012117448.1 hypothetical protein -
  ACFXAD_RS13540 (ACFXAD_13540) rok 2802238..2802834 (-) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  ACFXAD_RS13545 (ACFXAD_13545) - 2803287..2803745 (-) 459 WP_053573393.1 TlpA disulfide reductase family protein -
  ACFXAD_RS13550 (ACFXAD_13550) - 2804034..2804840 (+) 807 WP_015417373.1 mechanosensitive ion channel family protein -
  ACFXAD_RS13555 (ACFXAD_13555) - 2804874..2805119 (-) 246 WP_003154596.1 YkuS family protein -
  ACFXAD_RS13560 (ACFXAD_13560) - 2805180..2806304 (-) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  ACFXAD_RS13565 (ACFXAD_13565) dapD 2806375..2807085 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ACFXAD_RS13570 (ACFXAD_13570) - 2807167..2807622 (-) 456 WP_033574618.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=1058505 ACFXAD_RS13540 WP_012117447.1 2802238..2802834(-) (rok) [Bacillus amyloliquefaciens strain JP5011]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1058505 ACFXAD_RS13540 WP_012117447.1 2802238..2802834(-) (rok) [Bacillus amyloliquefaciens strain JP5011]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment