Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | ACFXAD_RS08715 | Genome accession | NZ_CP170653 |
| Coordinates | 1694652..1695689 (+) | Length | 345 a.a. |
| NCBI ID | WP_053573197.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain JP5011 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1689652..1700689
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFXAD_RS08695 (ACFXAD_08695) | - | 1690137..1690967 (+) | 831 | WP_053573195.1 | STAS domain-containing protein | - |
| ACFXAD_RS08700 (ACFXAD_08700) | - | 1691005..1692306 (-) | 1302 | WP_012117986.1 | hemolysin family protein | - |
| ACFXAD_RS08705 (ACFXAD_08705) | - | 1692452..1693402 (+) | 951 | WP_015417820.1 | magnesium transporter CorA family protein | - |
| ACFXAD_RS08710 (ACFXAD_08710) | comGA | 1693595..1694665 (+) | 1071 | WP_053573196.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACFXAD_RS08715 (ACFXAD_08715) | comGB | 1694652..1695689 (+) | 1038 | WP_053573197.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACFXAD_RS08720 (ACFXAD_08720) | comGC | 1695694..1696002 (+) | 309 | WP_079979070.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACFXAD_RS08725 (ACFXAD_08725) | comGD | 1695992..1696429 (+) | 438 | WP_012117983.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ACFXAD_RS08730 (ACFXAD_08730) | comGE | 1696413..1696727 (+) | 315 | WP_012117982.1 | competence type IV pilus minor pilin ComGE | - |
| ACFXAD_RS08735 (ACFXAD_08735) | comGF | 1696636..1697136 (+) | 501 | WP_256052909.1 | competence type IV pilus minor pilin ComGF | - |
| ACFXAD_RS08740 (ACFXAD_08740) | comGG | 1697137..1697514 (+) | 378 | WP_015417814.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| ACFXAD_RS08745 (ACFXAD_08745) | - | 1697571..1697750 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| ACFXAD_RS08750 (ACFXAD_08750) | - | 1697790..1698119 (-) | 330 | WP_039254490.1 | DUF3889 domain-containing protein | - |
| ACFXAD_RS08755 (ACFXAD_08755) | tapA | 1698378..1699049 (+) | 672 | WP_053573199.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ACFXAD_RS08760 (ACFXAD_08760) | sipW | 1699021..1699605 (+) | 585 | WP_015240205.1 | signal peptidase I SipW | - |
| ACFXAD_RS08765 (ACFXAD_08765) | tasA | 1699670..1700455 (+) | 786 | WP_007408329.1 | biofilm matrix protein TasA | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39586.97 Da Isoelectric Point: 9.6788
>NTDB_id=1058490 ACFXAD_RS08715 WP_053573197.1 1694652..1695689(+) (comGB) [Bacillus amyloliquefaciens strain JP5011]
MKRIKRTWPLKDQAAFLKRLGGMTEKGYSLIEGLRLLQLQLHKRQLAELKEGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLIFSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGGMTEKGYSLIEGLRLLQLQLHKRQLAELKEGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLIFSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=1058490 ACFXAD_RS08715 WP_053573197.1 1694652..1695689(+) (comGB) [Bacillus amyloliquefaciens strain JP5011]
ATGAAGCGGATTAAACGAACATGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGGAATGACGGAAAAAGG
ATACAGCCTGATTGAAGGGCTCAGACTGCTGCAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGAAGGAAGGAATCC
GCCGGCTGAGAGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTTTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACGTCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTTTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCGATCTATGACAGCTTAACAGCTTTTAAAGAGCAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAACGAACATGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGGAATGACGGAAAAAGG
ATACAGCCTGATTGAAGGGCTCAGACTGCTGCAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGAAGGAAGGAATCC
GCCGGCTGAGAGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTTTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACGTCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTTTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCGATCTATGACAGCTTAACAGCTTTTAAAGAGCAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
65.635 |
93.623 |
0.614 |