Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ACFXAD_RS00985 Genome accession   NZ_CP170653
Coordinates   168215..169327 (-) Length   370 a.a.
NCBI ID   WP_053573832.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 163215..174327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS00970 (ACFXAD_00970) gyrA 163304..165763 (-) 2460 WP_004392898.1 DNA gyrase subunit A -
  ACFXAD_RS00975 (ACFXAD_00975) gyrB 165979..167895 (-) 1917 WP_014720600.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ACFXAD_RS00980 (ACFXAD_00980) remB 167952..168197 (-) 246 WP_004392908.1 extracellular matrix regulator RemB -
  ACFXAD_RS00985 (ACFXAD_00985) recF 168215..169327 (-) 1113 WP_053573832.1 DNA replication/repair protein RecF Machinery gene
  ACFXAD_RS00990 (ACFXAD_00990) rlbA 169343..169558 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  ACFXAD_RS00995 (ACFXAD_00995) dnaN 169693..170829 (-) 1137 WP_053573833.1 DNA polymerase III subunit beta -
  ACFXAD_RS01000 (ACFXAD_01000) dnaA 171014..172354 (-) 1341 WP_007409908.1 chromosomal replication initiator protein DnaA -
  ACFXAD_RS01005 (ACFXAD_01005) rpmH 172976..173110 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  ACFXAD_RS01010 (ACFXAD_01010) rnpA 173264..173614 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=1058458 ACFXAD_RS00985 WP_053573832.1 168215..169327(-) (recF) [Bacillus amyloliquefaciens strain JP5011]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKLEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1058458 ACFXAD_RS00985 WP_053573832.1 168215..169327(-) (recF) [Bacillus amyloliquefaciens strain JP5011]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAACTAGAAGGAAGAGTGATGAAGCGAAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTAAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTGTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCTGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.054

100

0.941

Multiple sequence alignment