Detailed information NTG1058455

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ACFXAD_RS00425
• Genome accession: NZ_CP170653
• Coordinates: 65806..68241 (-)
• Length: 811 a.a.
• NCBI ID: WP_053573807.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5011
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 60806..73241

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAD_RS00400 (ACFXAD_00400)	ispF	60853..61329 (-)	477	WP_003156407.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACFXAD_RS00405 (ACFXAD_00405)	ispD	61322..62020 (-)	699	WP_015239038.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACFXAD_RS00410 (ACFXAD_00410)	-	62033..63133 (-)	1101	WP_003156403.1	PIN/TRAM domain-containing protein	-
ACFXAD_RS00415 (ACFXAD_00415)	disA	63247..64329 (-)	1083	WP_007410390.1	DNA integrity scanning diadenylate cyclase DisA	-
ACFXAD_RS00420 (ACFXAD_00420)	radA	64333..65712 (-)	1380	WP_014304212.1	DNA repair protein RadA	Machinery gene
ACFXAD_RS00425 (ACFXAD_00425)	clpC	65806..68241 (-)	2436	WP_053573807.1	ATP-dependent protease ATP-binding subunit ClpC	Regulator
ACFXAD_RS00430 (ACFXAD_00430)	-	68238..69329 (-)	1092	WP_003156398.1	protein arginine kinase	-
ACFXAD_RS00435 (ACFXAD_00435)	-	69329..69886 (-)	558	WP_053573806.1	UvrB/UvrC motif-containing protein	-
ACFXAD_RS00440 (ACFXAD_00440)	ctsR	69900..70364 (-)	465	WP_003156396.1	transcriptional regulator CtsR	-

Sequence

Protein

• Length: 811 a.a.
• Molecular weight: 90164.58 Da
• Isoelectric Point: 5.8528

>NTDB_id=1058455 ACFXAD_RS00425 WP_053573807.1 65806..68241(-) (clpC) [Bacillus amyloliquefaciens strain JP5011]
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN

Nucleotide

• Length: 2436 bp

>NTDB_id=1058455 ACFXAD_RS00425 WP_053573807.1 65806..68241(-) (clpC) [Bacillus amyloliquefaciens strain JP5011]
ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATACTATTAGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCTTTAGAAGCGCTTG
GCCTTAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATCGGTCGAGGGCAGGAGAGCACCACCTCTGTTCCTCAT
TACACACCTCGAGCCAAAAAGGTAATAGAGTTATCAATGGATGAAGCTAGAAAGCTAGGACATTCTTATGTGGGAACAGA
ACACATACTTCTCGGACTGATTCGTGAAGGAGAAGGCGTAGCGGCGAGAGTTCTGAATAATCTCGGTGTCAGCTTGAATA
AGGCGAGACAGCAAGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGGTCTTCTGCATCCGGTACGAACAGTAATGCGAAC
ACGCCGACGCTTGACAGCTTGGCGCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACGAAGAATAACCCCGTTCTTATCGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCTGAAGGCCTTGCACAGCAGATCATCAATAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACATTAGACATGGGTACGGTTGTAGCCGGTACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATACACTGATCGGAGCGGGGGGAGCAGAAGGTG
CGATTGACGCGTCGAATATCTTAAAACCTTCACTGGCCCGCGGAGAGCTTCAATGCATCGGTGCGACAACACTTGATGAA
TACCGTAAATATATCGAAAAAGACGCCGCTCTCGAGCGCCGTTTCCAGCCGATTCAGGTGGATCAGCCGTCAGCCGATGA
AAGCATTCAAATTTTAAAAGGACTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATTGAAG
CGGCGGTAAAATTGTCCGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCTGTTCAGAGCCAGGAGTTTGAAAAAGCGGCTTCCCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGACACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATCGCAATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCACTCCCGCGTCATCGGCCAGGATGAAGCCGTTGTAGCCGTTGCAAAGGCTGTCAGACGTGCAAGAGCCGGTCTGAAGG
ACCCGAAACGCCCGATTGGTTCATTCATCTTCCTAGGCCCTACAGGCGTTGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACACTCAACTTCACGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCACCCTGATGTGTTTAACATACTCCTGCAAGTGCTTGAAGACGGACGATTG
ACTGATTCAAAAGGACGCACTGTGGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTGGGCTTCAATGTGCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGC
TGCAAAAGCAAAAGTGGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGGTTATCAGAAGAACTCCTCAGAGGCAATATTGATAAAGGCCAGCACATTGTTCTTGATGTTGAGGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (344-445)

• AAA domain (Cdc48 subfamily) (AAA_2) (537-709)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (715-794)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-318)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-144)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-69)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	96.917	100	0.969
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.688	98.767	0.491
clpC	Streptococcus thermophilus LMD-9	46.359	100	0.471
clpC	Streptococcus thermophilus LMG 18311	46.117	100	0.469
clpC	Streptococcus pneumoniae Rx1	45.141	100	0.453
clpC	Streptococcus pneumoniae D39	45.141	100	0.453
clpC	Streptococcus mutans UA159	44.203	100	0.451
clpC	Streptococcus pneumoniae TIGR4	44.895	100	0.45
clpE	Streptococcus mutans UA159	53.313	80.025	0.427
clpC	Lactococcus lactis subsp. cremoris KW2	49.709	84.834	0.422
clpE	Streptococcus pneumoniae TIGR4	52.388	80.025	0.419
clpE	Streptococcus pneumoniae Rx1	52.388	80.025	0.419
clpE	Streptococcus pneumoniae D39	52.388	80.025	0.419
clpE	Streptococcus pneumoniae R6	52.388	80.025	0.419