Detailed information NTG1058452

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ACFW99_RS20070
• Genome accession: NZ_CP170651
• Coordinates: 4071968..4073080 (+)
• Length: 370 a.a.
• NCBI ID: WP_007409910.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5025
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4066968..4078080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFW99_RS20045 (ACFW99_20045)	rnpA	4067681..4068031 (-)	351	WP_004392944.1	ribonuclease P protein component	-
ACFW99_RS20050 (ACFW99_20050)	rpmH	4068185..4068319 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
ACFW99_RS20055 (ACFW99_20055)	dnaA	4068940..4070280 (+)	1341	WP_007409908.1	chromosomal replication initiator protein DnaA	-
ACFW99_RS20060 (ACFW99_20060)	dnaN	4070466..4071602 (+)	1137	WP_014416704.1	DNA polymerase III subunit beta	-
ACFW99_RS20065 (ACFW99_20065)	rlbA	4071737..4071952 (+)	216	WP_004392910.1	ribosome maturation protein RlbA	-
ACFW99_RS20070 (ACFW99_20070)	recF	4071968..4073080 (+)	1113	WP_007409910.1	DNA replication/repair protein RecF	Machinery gene
ACFW99_RS20075 (ACFW99_20075)	remB	4073098..4073343 (+)	246	WP_004392908.1	extracellular matrix regulator RemB	-
ACFW99_RS20080 (ACFW99_20080)	gyrB	4073400..4075316 (+)	1917	WP_014720600.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
ACFW99_RS20085 (ACFW99_20085)	gyrA	4075532..4077991 (+)	2460	WP_161620049.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42430.36 Da
• Isoelectric Point: 7.0882

>NTDB_id=1058452 ACFW99_RS20070 WP_007409910.1 4071968..4073080(+) (recF) [Bacillus amyloliquefaciens strain JP5025]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide

• Length: 1113 bp

>NTDB_id=1058452 ACFW99_RS20070 WP_007409910.1 4071968..4073080(+) (recF) [Bacillus amyloliquefaciens strain JP5025]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGAAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTAAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTGTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAACGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	94.324	100	0.943