Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACFW99_RS15285 Genome accession   NZ_CP170651
Coordinates   3101616..3102260 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain JP5025     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3096616..3107260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW99_RS15250 (ACFW99_15250) - 3097801..3098232 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  ACFW99_RS15255 (ACFW99_15255) - 3098232..3098573 (+) 342 WP_015418102.1 Na(+)/H(+) antiporter subunit C -
  ACFW99_RS15260 (ACFW99_15260) - 3098566..3100047 (+) 1482 WP_268540451.1 Na+/H+ antiporter subunit D -
  ACFW99_RS15265 (ACFW99_15265) - 3100053..3100529 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  ACFW99_RS15270 (ACFW99_15270) - 3100529..3100813 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  ACFW99_RS15275 (ACFW99_15275) mnhG 3100797..3101171 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ACFW99_RS15280 (ACFW99_15280) - 3101211..3101594 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  ACFW99_RS15285 (ACFW99_15285) comA 3101616..3102260 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  ACFW99_RS15290 (ACFW99_15290) comP 3102341..3104644 (-) 2304 WP_040238945.1 histidine kinase Regulator
  ACFW99_RS15295 (ACFW99_15295) comQ 3104797..3105783 (-) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  ACFW99_RS15300 (ACFW99_15300) degQ 3105914..3106054 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ACFW99_RS15305 (ACFW99_15305) - 3106520..3106861 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1058434 ACFW99_RS15285 WP_003152052.1 3101616..3102260(-) (comA) [Bacillus amyloliquefaciens strain JP5025]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1058434 ACFW99_RS15285 WP_003152052.1 3101616..3102260(-) (comA) [Bacillus amyloliquefaciens strain JP5025]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCTAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment