Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACFW99_RS13410 Genome accession   NZ_CP170651
Coordinates   2740686..2741438 (-) Length   250 a.a.
NCBI ID   WP_022552879.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5025     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2735686..2746438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW99_RS13385 (ACFW99_13385) mreC 2736122..2736985 (-) 864 WP_015417925.1 rod shape-determining protein MreC -
  ACFW99_RS13390 (ACFW99_13390) mreB 2737016..2738029 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACFW99_RS13395 (ACFW99_13395) radC 2738121..2738816 (-) 696 WP_007408165.1 DNA repair protein RadC -
  ACFW99_RS13400 (ACFW99_13400) - 2738848..2739417 (-) 570 WP_012118105.1 nucleoside triphosphate pyrophosphatase -
  ACFW99_RS13405 (ACFW99_13405) - 2739558..2740559 (-) 1002 WP_022552880.1 SPOR domain-containing protein -
  ACFW99_RS13410 (ACFW99_13410) comC 2740686..2741438 (-) 753 WP_022552879.1 A24 family peptidase Machinery gene
  ACFW99_RS13415 (ACFW99_13415) - 2741579..2742871 (-) 1293 WP_391590159.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACFW99_RS13420 (ACFW99_13420) - 2742930..2745572 (-) 2643 WP_224462768.1 valine--tRNA ligase -
  ACFW99_RS13425 (ACFW99_13425) - 2746025..2746216 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27249.96 Da        Isoelectric Point: 9.4293

>NTDB_id=1058429 ACFW99_RS13410 WP_022552879.1 2740686..2741438(-) (comC) [Bacillus amyloliquefaciens strain JP5025]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1058429 ACFW99_RS13410 WP_022552879.1 2740686..2741438(-) (comC) [Bacillus amyloliquefaciens strain JP5025]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCTGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCGAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment