Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ACFW99_RS07330 Genome accession   NZ_CP170651
Coordinates   1412963..1413559 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5025     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1407963..1418559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW99_RS07300 (ACFW99_07300) - 1408176..1408631 (+) 456 WP_268540362.1 flavodoxin -
  ACFW99_RS07305 (ACFW99_07305) dapD 1408713..1409423 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ACFW99_RS07310 (ACFW99_07310) - 1409494..1410618 (+) 1125 WP_060675291.1 N-acetyldiaminopimelate deacetylase -
  ACFW99_RS07315 (ACFW99_07315) - 1410679..1410924 (+) 246 WP_003154596.1 YkuS family protein -
  ACFW99_RS07320 (ACFW99_07320) - 1410958..1411764 (-) 807 WP_060675394.1 mechanosensitive ion channel family protein -
  ACFW99_RS07325 (ACFW99_07325) - 1412053..1412511 (+) 459 WP_095353001.1 TlpA disulfide reductase family protein -
  ACFW99_RS07330 (ACFW99_07330) rok 1412963..1413559 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  ACFW99_RS07335 (ACFW99_07335) - 1413580..1414572 (-) 993 WP_012117448.1 hypothetical protein -
  ACFW99_RS07340 (ACFW99_07340) - 1414718..1415320 (+) 603 WP_015239766.1 molybdenum cofactor guanylyltransferase -
  ACFW99_RS07345 (ACFW99_07345) - 1415372..1416391 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  ACFW99_RS07350 (ACFW99_07350) glp 1416409..1417701 (+) 1293 WP_103526930.1 gephyrin-like molybdotransferase Glp -
  ACFW99_RS07355 (ACFW99_07355) mobB 1417662..1418183 (+) 522 WP_015417376.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=1058405 ACFW99_RS07330 WP_012117447.1 1412963..1413559(+) (rok) [Bacillus amyloliquefaciens strain JP5025]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1058405 ACFW99_RS07330 WP_012117447.1 1412963..1413559(+) (rok) [Bacillus amyloliquefaciens strain JP5025]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCTGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment