Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ACFW99_RS04090 Genome accession   NZ_CP170651
Coordinates   837079..837870 (+) Length   263 a.a.
NCBI ID   WP_077391962.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5025     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 832079..842870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW99_RS04065 (ACFW99_04065) - 834076..834960 (+) 885 WP_094032653.1 PhzF family phenazine biosynthesis isomerase -
  ACFW99_RS04070 (ACFW99_04070) - 835037..835621 (+) 585 WP_015417058.1 nitroreductase -
  ACFW99_RS04075 (ACFW99_04075) - 835660..835851 (-) 192 WP_003155508.1 YfhD family protein -
  ACFW99_RS04080 (ACFW99_04080) - 835922..836032 (-) 111 WP_003155504.1 YfhE family protein -
  ACFW99_RS04085 (ACFW99_04085) - 836088..836987 (-) 900 WP_039252291.1 TIGR01777 family oxidoreductase -
  ACFW99_RS04090 (ACFW99_04090) recX 837079..837870 (+) 792 WP_077391962.1 recombination regulator RecX Regulator
  ACFW99_RS04095 (ACFW99_04095) - 837877..838191 (+) 315 WP_077391961.1 YfhH family protein -
  ACFW99_RS04100 (ACFW99_04100) - 838336..839529 (+) 1194 WP_095352312.1 MFS transporter -
  ACFW99_RS04105 (ACFW99_04105) - 839569..839958 (-) 390 WP_077391960.1 DUF2606 family protein -
  ACFW99_RS04110 (ACFW99_04110) - 839921..840832 (-) 912 WP_015417062.1 serine protease -
  ACFW99_RS04115 (ACFW99_04115) - 840979..841131 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  ACFW99_RS04120 (ACFW99_04120) - 841255..841524 (+) 270 WP_003155492.1 YfhJ family protein -
  ACFW99_RS04125 (ACFW99_04125) - 841657..842184 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  ACFW99_RS04130 (ACFW99_04130) - 842270..842605 (+) 336 WP_007408558.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30907.09 Da        Isoelectric Point: 5.8035

>NTDB_id=1058388 ACFW99_RS04090 WP_077391962.1 837079..837870(+) (recX) [Bacillus amyloliquefaciens strain JP5025]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYSYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIKQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1058388 ACFW99_RS04090 WP_077391962.1 837079..837870(+) (recX) [Bacillus amyloliquefaciens strain JP5025]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACAGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAAACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.848

100

0.798

Multiple sequence alignment