Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   O1Q83_RS03510 Genome accession   NZ_CP170642
Coordinates   736758..737711 (+) Length   317 a.a.
NCBI ID   WP_279387413.1    Uniprot ID   A0A4R1L0T4
Organism   Lonepinella koalarum strain ACM3666     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 731758..742711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q83_RS03485 (O1Q83_00685) - 732171..733001 (+) 831 WP_132300630.1 SirB1 family protein -
  O1Q83_RS03490 (O1Q83_00686) kdsA 733013..733867 (+) 855 WP_132300628.1 3-deoxy-8-phosphooctulonate synthase -
  O1Q83_RS03495 (O1Q83_00687) sfsA 734079..734795 (-) 717 WP_132300626.1 DNA/RNA nuclease SfsA -
  O1Q83_RS03500 (O1Q83_00688) - 734884..735153 (+) 270 WP_132300624.1 YcgL domain-containing protein -
  O1Q83_RS03505 (O1Q83_00689) mepM 735215..736627 (+) 1413 WP_132300622.1 murein DD-endopeptidase MepM -
  O1Q83_RS03510 (O1Q83_00690) ceuB 736758..737711 (+) 954 WP_279387413.1 ABC transporter permease Machinery gene
  O1Q83_RS03515 (O1Q83_00691) - 737715..738671 (+) 957 WP_132300620.1 iron chelate uptake ABC transporter family permease subunit -
  O1Q83_RS03520 (O1Q83_00692) - 738678..739439 (+) 762 WP_132300618.1 ABC transporter ATP-binding protein -
  O1Q83_RS03525 (O1Q83_00693) - 739475..740386 (+) 912 WP_132300616.1 siderophore ABC transporter substrate-binding protein -
  O1Q83_RS03530 (O1Q83_00694) ompA 740752..741834 (+) 1083 WP_132300614.1 porin OmpA -
  O1Q83_RS03535 (O1Q83_00695) - 741935..742516 (+) 582 WP_132300612.1 LemA family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34585.64 Da        Isoelectric Point: 9.6458

>NTDB_id=1058280 O1Q83_RS03510 WP_279387413.1 736758..737711(+) (ceuB) [Lonepinella koalarum strain ACM3666]
MIKRRYLFLLVILLSVLSLFIGVSTVNLTGLFALDGEQWEIFAISRVPRLVSILIAGSALSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILIAILLFPSASMLVKTGIAIAVSFLGTLLFMSILSRLKFKDSIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLAGWLQGDFSLVMAGRYEMLYFSLPALIIAYLFANRFSIVGMGEEFATNLGLNYQQVLYLGLAIVATVSSIIIVSVG
VIPFLGLIVPNLVTLYLGDNLKKILSHTALLGAVFVLFCDILGRLVIFPYEISINAVVGVFGSAIFLILLFKRYQQG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1058280 O1Q83_RS03510 WP_279387413.1 736758..737711(+) (ceuB) [Lonepinella koalarum strain ACM3666]
TTGATTAAACGCCGTTACTTATTTTTGTTGGTTATTTTGCTTTCTGTGTTGTCCCTGTTTATCGGTGTTAGCACGGTAAA
TTTGACGGGTTTATTTGCCCTTGACGGTGAACAATGGGAAATTTTTGCCATTAGTCGTGTACCACGTTTGGTCAGCATTT
TGATTGCGGGATCTGCGTTGAGTATTTGTGGTTTAGTTATGCAACAATTGAGTCGTAACCGTTTTGTTTCACCCACCACC
GCAGGTACAATGGATAGTGCCAGATTAGGTATTTTAATTGCTATTTTACTTTTCCCATCCGCATCAATGTTAGTGAAAAC
AGGCATTGCTATTGCTGTTTCTTTTTTGGGAACATTGCTATTTATGAGCATTCTGTCTCGTCTCAAATTTAAAGACAGTA
TTTTTGTCCCTTTAGTGGGAATTATGTTTGGTAATATTATCAGCTCTATTACGGCATTTATTGCTTATAAAGAAGATCTG
TTACAAAACCTTGCTGGCTGGCTGCAAGGGGATTTTTCATTGGTCATGGCTGGGCGTTATGAGATGCTGTATTTTAGCTT
ACCAGCGTTAATTATTGCTTATTTATTTGCCAATCGGTTTTCCATTGTCGGAATGGGCGAAGAATTTGCAACTAATCTTG
GGTTGAATTATCAGCAGGTCCTGTATTTAGGGCTCGCTATTGTCGCGACAGTGTCTTCAATTATTATTGTTTCTGTCGGT
GTCATTCCATTTTTAGGTTTGATCGTGCCAAATTTAGTTACCCTTTATTTAGGTGATAATTTGAAAAAGATTCTGTCACA
TACTGCGTTACTAGGAGCGGTATTTGTACTGTTTTGTGATATTTTAGGTCGCCTTGTGATTTTCCCTTACGAAATTTCTA
TCAATGCTGTTGTGGGTGTGTTTGGTAGCGCGATATTTCTGATTTTATTATTTAAACGTTATCAACAGGGTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R1L0T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.045

97.476

0.527

Multiple sequence alignment