Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACFJIW_RS18520 Genome accession   NZ_CP170554
Coordinates   4457788..4459164 (+) Length   458 a.a.
NCBI ID   WP_386066512.1    Uniprot ID   -
Organism   Tahibacter sp. UC22_41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4452788..4464164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJIW_RS18495 (ACFJIW_18495) rpsF 4453549..4453959 (+) 411 WP_386066507.1 30S ribosomal protein S6 -
  ACFJIW_RS18500 (ACFJIW_18500) rpsR 4453975..4454199 (+) 225 WP_386066508.1 30S ribosomal protein S18 -
  ACFJIW_RS18505 (ACFJIW_18505) rplI 4454491..4454937 (+) 447 WP_386066509.1 50S ribosomal protein L9 -
  ACFJIW_RS18510 (ACFJIW_18510) - 4455130..4456518 (+) 1389 WP_386066510.1 replicative DNA helicase -
  ACFJIW_RS18515 (ACFJIW_18515) alr 4456701..4457774 (+) 1074 WP_386066511.1 alanine racemase -
  ACFJIW_RS18520 (ACFJIW_18520) radA 4457788..4459164 (+) 1377 WP_386066512.1 DNA repair protein RadA Machinery gene
  ACFJIW_RS18525 (ACFJIW_18525) - 4459492..4460100 (-) 609 WP_386066513.1 YceI family protein -
  ACFJIW_RS18530 (ACFJIW_18530) - 4460254..4460742 (-) 489 WP_386066514.1 SRPBCC family protein -
  ACFJIW_RS18535 (ACFJIW_18535) - 4460969..4462243 (-) 1275 WP_386066515.1 RNA polymerase sigma factor -
  ACFJIW_RS18540 (ACFJIW_18540) - 4462294..4462821 (-) 528 WP_386066516.1 SRPBCC family protein -
  ACFJIW_RS18545 (ACFJIW_18545) - 4462911..4463336 (-) 426 WP_386066517.1 YciI family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48297.64 Da        Isoelectric Point: 7.7510

>NTDB_id=1057968 ACFJIW_RS18520 WP_386066512.1 4457788..4459164(+) (radA) [Tahibacter sp. UC22_41]
MAKAKTAYVCNECGSEHTKWQGQCTDCGAWNSLSEIVVNPAKAAPAAARRGGYAGDASAPRVLSLNDVAQTVEARTSIGI
GELDRVLGGGLVDGSVVLIGGDPGIGKSTLLLQMLGALGERLSGLYVSGEESLAQVAARAQRLGLPLAPLRALAETCVER
IIEHAAAQKPRVLIVDSIQTIWTELLTAAPGSVSQVRESAARLTRFAKETGISVFLVGHVTKEGGIAGPRVLEHMVDAVL
YFEGESGSRFRVLRAFKNRFGAVNELGVFAMSEKGLREVPNPSAIFLSAHAGPTPGSAVMVTREGTRPLLVEVQALVDQS
PLANPRRVALGLEQNRLAMLLAVLHRHGGAAVYDQDVFVNVVGGIRVQETAADLPILFAILSSFRDRALPDKLVAFGEVG
LSGEIRPVPNGEDRLKEAATHGFLKAVVPKANAPKKSRVGDMEVIGVERLSEALGAIL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1057968 ACFJIW_RS18520 WP_386066512.1 4457788..4459164(+) (radA) [Tahibacter sp. UC22_41]
ATGGCCAAGGCGAAGACCGCCTACGTCTGCAACGAATGCGGCAGCGAACATACGAAATGGCAAGGCCAGTGCACCGACTG
CGGCGCCTGGAACTCGCTGAGCGAGATCGTCGTGAATCCGGCCAAGGCGGCACCGGCCGCCGCGCGGCGCGGCGGTTATG
CGGGCGACGCGAGCGCACCGCGCGTGCTGTCGCTGAACGACGTCGCGCAGACCGTCGAGGCACGCACCTCGATCGGCATC
GGCGAGCTCGATCGCGTGCTCGGCGGCGGCCTCGTCGACGGCTCCGTCGTGCTGATCGGCGGCGATCCCGGCATCGGCAA
GTCCACCCTGCTGCTGCAGATGCTCGGCGCGCTCGGCGAGCGGCTCAGCGGTCTGTACGTCAGCGGCGAGGAATCGCTGG
CCCAGGTCGCCGCGCGCGCGCAGCGTCTGGGCCTGCCGCTCGCGCCGCTGCGCGCGCTGGCCGAAACCTGCGTGGAACGC
ATCATCGAGCATGCCGCGGCACAGAAGCCGCGCGTGCTGATCGTCGATTCGATACAGACGATCTGGACCGAGCTGCTGAC
TGCCGCACCGGGCTCGGTCAGCCAGGTACGCGAATCGGCGGCGCGGCTCACGCGCTTCGCCAAGGAAACCGGCATCAGCG
TATTCCTCGTCGGGCACGTGACCAAGGAAGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGACGCGGTGCTG
TATTTCGAAGGCGAATCCGGCAGCCGCTTCCGCGTACTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGG
CGTGTTCGCGATGTCGGAAAAAGGCCTGCGCGAAGTGCCGAACCCGTCGGCCATCTTCCTGTCGGCGCATGCGGGGCCGA
CGCCGGGCAGCGCGGTCATGGTCACGCGCGAAGGCACGCGGCCGCTGCTCGTCGAAGTGCAGGCCCTCGTGGACCAGTCG
CCGCTCGCGAATCCGCGCCGCGTCGCGCTGGGCCTGGAACAGAACCGCCTCGCGATGCTGCTCGCGGTGCTGCACCGCCA
CGGCGGCGCCGCGGTCTACGACCAGGACGTGTTCGTCAACGTCGTCGGCGGCATCCGCGTGCAGGAAACCGCGGCCGACC
TGCCGATCCTGTTCGCGATCCTGTCGAGCTTCCGCGACCGCGCGCTGCCCGACAAACTCGTCGCGTTCGGCGAAGTCGGC
CTGTCGGGCGAGATACGTCCCGTGCCCAACGGCGAGGACCGCCTCAAGGAAGCCGCGACCCACGGTTTTCTCAAGGCCGT
CGTGCCGAAAGCGAACGCGCCGAAGAAATCCCGCGTCGGCGACATGGAAGTCATCGGCGTCGAACGCCTGAGCGAAGCGC
TCGGCGCGATCCTGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

AAA domain (AAA_25)

(85-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

99.563

0.489
  radA Streptococcus pneumoniae Rx1

44.978

100

0.45
  radA Streptococcus pneumoniae D39

44.978

100

0.45
  radA Streptococcus pneumoniae R6

44.978

100

0.45
  radA Streptococcus pneumoniae TIGR4

44.978

100

0.45
  radA Streptococcus mitis NCTC 12261

44.978

100

0.45
  radA Streptococcus mitis SK321

44.978

100

0.45

Multiple sequence alignment