Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACFJGY_RS06025 Genome accession   NZ_CP170547
Coordinates   1259008..1260351 (-) Length   447 a.a.
NCBI ID   WP_379969099.1    Uniprot ID   -
Organism   Epilithonimonas sp. UC225_85     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1254008..1265351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJGY_RS05995 (ACFJGY_05995) - 1254235..1254603 (+) 369 WP_379969089.1 hypothetical protein -
  ACFJGY_RS06000 (ACFJGY_06000) - 1254819..1255385 (-) 567 WP_379969091.1 HupE/UreJ family protein -
  ACFJGY_RS06005 (ACFJGY_06005) - 1255449..1255952 (+) 504 WP_379969093.1 DUF6702 family protein -
  ACFJGY_RS06010 (ACFJGY_06010) - 1256051..1256422 (+) 372 WP_379970111.1 VOC family protein -
  ACFJGY_RS06015 (ACFJGY_06015) - 1256838..1258298 (-) 1461 WP_379969095.1 transcriptional regulator -
  ACFJGY_RS06020 (ACFJGY_06020) - 1258400..1258969 (-) 570 WP_379969097.1 ACP phosphodiesterase -
  ACFJGY_RS06025 (ACFJGY_06025) radA 1259008..1260351 (-) 1344 WP_379969099.1 DNA repair protein RadA Machinery gene
  ACFJGY_RS06030 (ACFJGY_06030) - 1260507..1261007 (+) 501 WP_379969101.1 peptidylprolyl isomerase -
  ACFJGY_RS06035 (ACFJGY_06035) - 1261145..1263241 (-) 2097 WP_379970113.1 M4 family metallopeptidase -
  ACFJGY_RS06040 (ACFJGY_06040) - 1263235..1263903 (-) 669 WP_379969103.1 hypothetical protein -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49368.02 Da        Isoelectric Point: 6.0389

>NTDB_id=1057897 ACFJGY_RS06025 WP_379969099.1 1259008..1260351(-) (radA) [Epilithonimonas sp. UC225_85]
MAKLKTLYFCQNCGAQYSQWHGQCKTCGEWNTLVEEIVEKTTKSIATKSKSSIINIIEVETIEEPRIITPSEELNRVLGG
GIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLAEVKNPNCFLFTETSVEKILHEAKKLEP
DFIIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKFAKDNNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHLF
RLLRANKNRFGSTSEIGIYEMISSGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRSST
GFDSKRLNMLLAVLEKRAGFQLGSKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHYCFAGEIGLSGEIRPVAQ
VEQRITEAEKLGYEKIFISNLNKLPKKKFGIKVEEISKIEDFVESLF

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=1057897 ACFJGY_RS06025 WP_379969099.1 1259008..1260351(-) (radA) [Epilithonimonas sp. UC225_85]
ATGGCAAAACTCAAAACTCTATATTTCTGTCAGAACTGCGGTGCACAATATTCTCAATGGCACGGGCAATGCAAAACCTG
TGGCGAATGGAATACGTTAGTAGAAGAGATCGTGGAAAAAACCACAAAATCAATTGCTACAAAGTCCAAATCTTCCATCA
TCAATATTATTGAAGTTGAGACTATTGAGGAACCAAGAATCATAACACCTTCCGAGGAACTGAACCGTGTTTTGGGCGGC
GGAATCGTCCTCGGTTCCGTAACTTTAATCGGAGGCGAACCGGGAATCGGGAAATCAACTTTGCTTCTTCAGCTCGCCTT
GAAAATGAAGAAAAAAATTCTTTATGTTTCGGGAGAGGAAAGTGCATCTCAAATCAAAATGCGCGCAGACAGATTAGCCG
AAGTTAAAAATCCCAATTGTTTTCTGTTCACCGAAACTTCCGTGGAGAAAATCCTTCACGAAGCCAAAAAACTGGAACCG
GACTTCATCATAATTGATTCTATTCAGACTTTGCAATCTCAGCTGATAGAAAGTTCGCCGGGAACGGTTTCCCAGATCAG
GGAATGTTCCAACGAGATCATCAAATTTGCCAAAGACAATAATGTTCCTGTTTTTCTGGTTGGTCATATTACCAAAGACG
GACAGATTGCCGGTCCGAAAGTTCTGGAACACATGGTAGATGTTGTCCTCAACTTTGATGGCGACAGAAATCACCTTTTC
AGATTGCTGAGAGCTAACAAAAATCGTTTTGGCTCCACTTCCGAGATCGGAATTTATGAAATGATATCCAGTGGTTTGAA
AGAAATTAAAAATCCTTCGGAAATTCTTATTACCAAGAAATTTGAAGAGCTTTCCGGAAATTCAGTGGCAGTAACTTTGG
AAGGAAACCGCCCGATGTTGCTGGAAATTCAGGCTCTCGTAAGCACTGCAGTTTATGGAACGCCGCAGAGAAGCTCGACT
GGTTTTGATTCCAAAAGGCTGAATATGCTATTGGCAGTTCTGGAAAAACGCGCCGGTTTCCAACTCGGTTCAAAAGATGT
TTTCCTGAATATCACGGGCGGAATCAAAACCGATGATCCTGCTTTGGATCTCGCAGTTGTCGCTTCGATTCTATCAAGTA
ATGAAGATATTGCCATCTCCGAACACTATTGTTTTGCAGGAGAAATTGGTTTGAGCGGTGAAATACGTCCGGTTGCACAA
GTAGAGCAACGTATTACAGAAGCTGAAAAACTGGGTTATGAGAAGATATTTATTTCCAATCTCAACAAACTTCCAAAGAA
AAAGTTCGGGATAAAAGTAGAAGAAATAAGCAAGATCGAAGATTTTGTGGAATCATTATTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-215)

Subunit ChlI of Mg-chelatase (ChlI)

(336-420)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.035

100

0.492
  radA Streptococcus mitis NCTC 12261

47.588

100

0.485
  radA Streptococcus pneumoniae D39

47.368

100

0.483
  radA Streptococcus pneumoniae TIGR4

47.368

100

0.483
  radA Streptococcus pneumoniae R6

47.368

100

0.483
  radA Streptococcus pneumoniae Rx1

47.368

100

0.483
  radA Streptococcus mitis SK321

49.409

94.631

0.468

Multiple sequence alignment