Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V6M93_RS13730 Genome accession   NZ_CP170503
Coordinates   3100452..3101834 (+) Length   460 a.a.
NCBI ID   WP_014914021.1    Uniprot ID   A0A3S0ZXC5
Organism   Pectobacterium brasiliense strain BSRLOP2CAB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3095452..3106834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6M93_RS13710 (V6M93_13710) prfC 3095737..3097326 (-) 1590 WP_039510188.1 peptide chain release factor 3 -
  V6M93_RS13715 (V6M93_13715) - 3097618..3098553 (+) 936 WP_039510186.1 hypothetical protein -
  V6M93_RS13720 (V6M93_13720) - 3098602..3099300 (-) 699 WP_039510184.1 YtjB family periplasmic protein -
  V6M93_RS13725 (V6M93_13725) serB 3099457..3100434 (+) 978 WP_039510182.1 phosphoserine phosphatase -
  V6M93_RS13730 (V6M93_13730) radA 3100452..3101834 (+) 1383 WP_014914021.1 DNA repair protein RadA Machinery gene
  V6M93_RS13735 (V6M93_13735) nadR 3101953..3103206 (+) 1254 WP_039510181.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  V6M93_RS13740 (V6M93_13740) - 3103203..3103850 (-) 648 WP_039510179.1 5-formyltetrahydrofolate cyclo-ligase -
  V6M93_RS13750 (V6M93_13750) zapA 3104148..3104477 (-) 330 WP_010284667.1 cell division protein ZapA -
  V6M93_RS13755 (V6M93_13755) - 3104670..3105257 (+) 588 WP_010284662.1 YecA family protein -
  V6M93_RS13760 (V6M93_13760) pepP 3105315..3106640 (+) 1326 WP_379057489.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49620.19 Da        Isoelectric Point: 7.4218

>NTDB_id=1057808 V6M93_RS13730 WP_014914021.1 3100452..3101834(+) (radA) [Pectobacterium brasiliense strain BSRLOP2CAB]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASTSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKVPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1057808 V6M93_RS13730 WP_014914021.1 3100452..3101834(+) (radA) [Pectobacterium brasiliense strain BSRLOP2CAB]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACCGAAGTCCGTCTGGCCTCGGCGTCAACATCACGTTCCGACCGTCTCACCGGCTATG
CGGGCGAAAGCGCTGGCGTCAGCCGGGTACAAAAGCTCTCGGAAATCAGTCTTGAAGCCCTGCCGCGCTTTTCCACCGGT
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCGGGCAGCGCGATTCTGATCGGCGGTAACCCTGGCGCGGG
TAAAAGTACCTTACTGCTGCAAACGCTCTGCAAGCTGTCAGAGAACATGAAAACCCTGTACGTCACCGGGGAAGAATCCT
TGCAGCAGGTGGCGATGCGGGCGCATCGTCTCAACCTGCCGACCCAAAATCTCAATATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTGATGCATCTCGCGGATAT
TCAATCGTCACCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTTGCAAAAACGCGCGGCGTCG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCAAAAGTATTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGCCATAAAAACCGCTTCGGTGCCGTTAACGAGCT
GGGCGTGTTCGCGATGACGGAACAGGGTCTACGCGAGATCAGCAATCCGTCGGCAATTTTCCTCAGTCGCGGTGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGTACGCGTCCGCTGCTGGTCGAGATTCAGGCGCTGGTGGATCAA
TCGATGATGGCCAACCCGCGTCGCGTGGCGGTCGGGCTGGAGCAAAATCGCCTGGCGATCCTGCTGGCGGTATTACATCG
CCATGGCGGCTTGCAGATGTCCGATCAGGATGTATTCGTGAACGTTGTCGGCGGCGTTAAAGTCACCGAAACCAGCGCCG
ACCTGGCGCTGCTGCTCTCGCTGGTTTCCAGCTTCCGTGACCGCCCACTGCCGCAGGATCTTGTCATCTTCGGTGAAGTC
GGTCTGGCGGGTGAAATCCGCCCGGTTCCCAGCGGCCAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGTCCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGATGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S0ZXC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426

Multiple sequence alignment