Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   VWC80_RS21705 Genome accession   NZ_CP170495
Coordinates   4211712..4212755 (-) Length   347 a.a.
NCBI ID   WP_001013180.1    Uniprot ID   A0A9X5WLU9
Organism   Bacillus thuringiensis strain IPPBIOTSUC-1012     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4206712..4217755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VWC80_RS21660 (VWC80_21640) - 4207143..4207343 (-) 201 WP_000106083.1 YqzE family protein -
  VWC80_RS21665 (VWC80_21645) - 4207382..4207879 (-) 498 WP_000836650.1 shikimate kinase -
  VWC80_RS21670 (VWC80_21650) - 4207995..4208645 (-) 651 WP_000183860.1 2OG-Fe(II) oxygenase -
  VWC80_RS21675 (VWC80_21655) comGG 4208822..4209193 (-) 372 WP_001231273.1 competence type IV pilus minor pilin ComGG -
  VWC80_RS21680 (VWC80_21660) comGF 4209190..4209660 (-) 471 WP_000923098.1 competence type IV pilus minor pilin ComGF -
  VWC80_RS21685 (VWC80_21665) - 4209630..4209932 (-) 303 WP_000829471.1 hypothetical protein -
  VWC80_RS21690 (VWC80_21670) comGD 4209925..4210380 (-) 456 WP_000813142.1 competence type IV pilus minor pilin ComGD -
  VWC80_RS21695 (VWC80_21675) comGC 4210377..4210676 (-) 300 WP_001178686.1 competence type IV pilus major pilin ComGC -
  VWC80_RS21700 (VWC80_21680) comGB 4210688..4211719 (-) 1032 WP_000475184.1 competence type IV pilus assembly protein ComGB -
  VWC80_RS21705 (VWC80_21685) comGA 4211712..4212755 (-) 1044 WP_001013180.1 competence type IV pilus ATPase ComGA Machinery gene
  VWC80_RS21710 (VWC80_21690) - 4212961..4213656 (+) 696 WP_000434125.1 metalloregulator ArsR/SmtB family transcription factor -
  VWC80_RS21715 (VWC80_21695) - 4213782..4214024 (+) 243 WP_000440721.1 DUF2626 domain-containing protein -
  VWC80_RS21720 (VWC80_21700) - 4214131..4215525 (+) 1395 WP_087875723.1 L-cystine transporter -
  VWC80_RS21725 (VWC80_21705) - 4215605..4215997 (-) 393 WP_000875390.1 hypothetical protein -
  VWC80_RS21730 (VWC80_21710) - 4216085..4216300 (-) 216 WP_001008326.1 DUF3912 family protein -
  VWC80_RS21735 (VWC80_21715) - 4216553..4216864 (+) 312 WP_001093237.1 hypothetical protein -
  VWC80_RS21740 (VWC80_21720) - 4216899..4217387 (-) 489 WP_000764267.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39157.52 Da        Isoelectric Point: 8.5482

>NTDB_id=1057749 VWC80_RS21705 WP_001013180.1 4211712..4212755(-) (comGA) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
MNGIEIFANTILKEACRVQASDLHIVPRQKDVAVQLRIGKDLMTRQCIEKEFGEKLVSHFKFLASMDIGEKRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSTAAKLLSFLRYSQGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIITLEDPVEKRSDDVLQIQINEKAGLTYETGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAIIRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSTLCKSMRQVRQASIYELLYGHELKQALKEADGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1057749 VWC80_RS21705 WP_001013180.1 4211712..4212755(-) (comGA) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
ATGAATGGGATTGAAATTTTTGCGAATACAATTTTAAAAGAAGCGTGTAGGGTACAAGCGTCAGATTTACATATTGTGCC
CCGGCAGAAGGATGTAGCAGTGCAACTACGTATAGGAAAAGATTTAATGACGAGACAGTGTATTGAAAAGGAGTTTGGAG
AAAAACTTGTCTCACATTTCAAATTTTTAGCATCTATGGACATAGGAGAGAAACGGAAGCCACAGAATGGTTCGTTGTAT
TTGCAAATTGATGGACAAGAAGTGTATTTACGCCTTTCGACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
TCATTTACAAGCATCTGTTCAGCCCTTATCACATCTTTCGTTATTTCCAAGTACGGCAGCAAAACTACTCTCGTTTTTAC
GCTATTCACAGGGGCTACTCGTATTTACTGGACCGACTGGATCTGGGAAGACGACGACAATGTATGCATTATTAGAAGTA
ATTAGAAAAAAGAAAACACGTCGCATCATTACACTTGAAGATCCGGTTGAAAAAAGAAGTGACGATGTATTACAAATTCA
AATAAATGAAAAAGCGGGTCTCACATATGAAACAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATCCGGGATGAGGAAACAGCAAAAATAGCTATAAGGGCAAGTTTGACAGGACATTTAGTAATGACAACGCTGCAT
ACGAATGATGCGAAAGGAGCAATCATTCGTTTCATGGATTATGGTATAACGAGGCAAGAGATTGAACAGTCTTTATTGGC
TGTAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAGAGGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGGCAAGCAAGCATTTATGAGCTACTATATGGACATGAGTTAAAACAAGCACTTAAAGAAGCAGATGGAGAATGT
GTTACTTACAAACATGAGACTTTAGAATCGTCAATACGAAAAGGATATGCTTTAGGTTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.908

100

0.559

Multiple sequence alignment