Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VWC80_RS10450 Genome accession   NZ_CP170495
Coordinates   1987891..1988178 (+) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus thuringiensis strain IPPBIOTSUC-1012     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1982891..1993178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VWC80_RS10430 (VWC80_10420) - 1984065..1984262 (+) 198 WP_001048091.1 DUF4083 domain-containing protein -
  VWC80_RS10435 (VWC80_10425) - 1984294..1984755 (+) 462 WP_000024999.1 NUDIX hydrolase -
  VWC80_RS10440 (VWC80_10430) nadE 1984805..1985623 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  VWC80_RS10445 (VWC80_10435) - 1985894..1987774 (+) 1881 WP_087875228.1 FtsX-like permease family protein -
  VWC80_RS10450 (VWC80_10440) abrB 1987891..1988178 (+) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  VWC80_RS10455 (VWC80_10445) - 1988453..1989400 (+) 948 WP_000099756.1 serine protease -
  VWC80_RS10460 (VWC80_10450) - 1989450..1989788 (+) 339 Protein_1972 MFS transporter permease -
  VWC80_RS10465 (VWC80_10455) - 1989837..1990043 (+) 207 WP_001101741.1 hypothetical protein -
  VWC80_RS10470 (VWC80_10460) - 1990187..1990549 (+) 363 WP_001198794.1 DUF805 domain-containing protein -
  VWC80_RS10475 (VWC80_10465) - 1990749..1990973 (-) 225 WP_000162602.1 hypothetical protein -
  VWC80_RS10480 (VWC80_10470) - 1991058..1991405 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  VWC80_RS10485 (VWC80_10475) - 1991602..1992129 (+) 528 WP_087875230.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=1057738 VWC80_RS10450 WP_000648325.1 1987891..1988178(+) (abrB) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1057738 VWC80_RS10450 WP_000648325.1 1987891..1988178(+) (abrB) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGCATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment