Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   VWC80_RS08500 Genome accession   NZ_CP170495
Coordinates   1600470..1601072 (-) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus thuringiensis strain IPPBIOTSUC-1012     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1595470..1606072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VWC80_RS08480 (VWC80_08470) dnaD 1595789..1596496 (+) 708 WP_000728542.1 DNA replication protein DnaD -
  VWC80_RS08485 (VWC80_08475) nth 1596512..1597159 (+) 648 WP_000933030.1 endonuclease III -
  VWC80_RS08490 (VWC80_08480) - 1597163..1597681 (+) 519 WP_006924378.1 YpoC family protein -
  VWC80_RS08495 (VWC80_08485) - 1597707..1600403 (-) 2697 WP_087875121.1 PBP1A family penicillin-binding protein -
  VWC80_RS08500 (VWC80_08490) recU 1600470..1601072 (-) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  VWC80_RS08505 (VWC80_08495) - 1601176..1602201 (+) 1026 WP_000495656.1 DUF2515 domain-containing protein -
  VWC80_RS08510 (VWC80_08500) - 1602353..1602532 (-) 180 WP_087875122.1 phage portal protein -
  VWC80_RS08515 (VWC80_08505) - 1602618..1602860 (+) 243 WP_070757132.1 hypothetical protein -
  VWC80_RS08520 (VWC80_08510) - 1602876..1603220 (+) 345 WP_000786940.1 YppE family protein -
  VWC80_RS08525 (VWC80_08515) - 1603247..1603438 (-) 192 WP_000242652.1 YppF family protein -
  VWC80_RS08530 (VWC80_08520) - 1603616..1604179 (+) 564 WP_087875123.1 YppG family protein -
  VWC80_RS08535 (VWC80_08525) - 1604335..1604763 (+) 429 WP_000546268.1 CotD family spore coat protein -
  VWC80_RS08540 (VWC80_08530) - 1604820..1605374 (+) 555 WP_000862914.1 DUF1273 domain-containing protein -
  VWC80_RS08545 (VWC80_08535) gpsB 1605473..1605808 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=1057737 VWC80_RS08500 WP_000155598.1 1600470..1601072(-) (recU) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1057737 VWC80_RS08500 WP_000155598.1 1600470..1601072(-) (recU) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACCAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTCGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment