Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   VWC80_RS07170 Genome accession   NZ_CP170495
Coordinates   1357883..1358206 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain IPPBIOTSUC-1012     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1352883..1363206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VWC80_RS07145 (VWC80_07135) - 1353157..1354443 (+) 1287 WP_000247031.1 D-alanyl-D-alanine carboxypeptidase family protein -
  VWC80_RS07150 (VWC80_07140) sipW 1354634..1355203 (+) 570 WP_000767792.1 signal peptidase I SipW -
  VWC80_RS07155 (VWC80_07145) - 1355264..1355851 (+) 588 WP_000172854.1 CalY family protein -
  VWC80_RS07160 (VWC80_07150) - 1355986..1356828 (+) 843 WP_157686415.1 DUF4047 domain-containing protein -
  VWC80_RS07165 (VWC80_07155) calY 1357216..1357809 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  VWC80_RS07170 (VWC80_07160) sinR 1357883..1358206 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  VWC80_RS07175 (VWC80_07165) - 1358286..1358420 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  VWC80_RS07180 (VWC80_07170) inhA1 1358763..1361153 (+) 2391 WP_087875085.1 M6 family metalloprotease immune inhibitor InhA1 -
  VWC80_RS07185 (VWC80_07175) - 1361325..1362692 (+) 1368 WP_000028382.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=1057735 VWC80_RS07170 WP_000578885.1 1357883..1358206(-) (sinR) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1057735 VWC80_RS07170 WP_000578885.1 1357883..1358206(-) (sinR) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment