Detailed information NTG1057693

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACFBML_RS13015
• Genome accession: NZ_CP170491
• Coordinates: 2879158..2880141 (-)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain LcV6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2874158..2885141

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFBML_RS13000 (ACFBML_13000)	recA	2874690..2875733 (-)	1044	WP_005436413.1	recombinase RecA	Machinery gene
ACFBML_RS13005 (ACFBML_13005)	pncC	2875935..2876417 (-)	483	WP_005452118.1	nicotinamide-nucleotide amidase	-
ACFBML_RS13010 (ACFBML_13010)	mutS	2876503..2879064 (+)	2562	WP_050907764.1	DNA mismatch repair protein MutS	-
ACFBML_RS13015 (ACFBML_13015)	rpoS	2879158..2880141 (-)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
ACFBML_RS13020 (ACFBML_13020)	-	2880222..2881145 (-)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACFBML_RS13025 (ACFBML_13025)	-	2881160..2881786 (-)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACFBML_RS13030 (ACFBML_13030)	surE	2881786..2882562 (-)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
ACFBML_RS13035 (ACFBML_13035)	truD	2882562..2883605 (-)	1044	WP_038899661.1	tRNA pseudouridine(13) synthase TruD	-
ACFBML_RS13040 (ACFBML_13040)	ispF	2883651..2884127 (-)	477	WP_390338065.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACFBML_RS13045 (ACFBML_13045)	ispD	2884142..2884852 (-)	711	WP_033008767.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACFBML_RS13050 (ACFBML_13050)	ftsB	2884854..2885135 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=1057693 ACFBML_RS13015 WP_005452115.1 2879158..2880141(-) (rpoS) [Vibrio harveyi strain LcV6]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=1057693 ACFBML_RS13015 WP_005452115.1 2879158..2880141(-) (rpoS) [Vibrio harveyi strain LcV6]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACTTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACACCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856